Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 >seq4 Length=23952536 Score = 100 bits (110), Expect = 3e-16 Identities = 195/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||| || || ||||| ||||||| | ||||||||||| || |||||| | || Sbjct 633374 TTCATATAGCGAATCTTACCAAATATCGCGCGCTCCTTCCAACCTTGGTCGTGAATCCCA 633315 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || || ||||| || || ||||| ||| || | ||| |||||| Sbjct 633314 CCGATGGACCACATGCAACCAACGTAGCCATTCGGATCACGTCCATCCAGACT-GTACTT 633256 Query 119055 ATCGTTTAAGTAGATACAGACGCTTAA-CGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| || | || | | || || ||| |||||| || | |||| || | | Sbjct 633255 GTCGTTCAATAATATGCT-ATACTCAAGCGCCTGTTCCGGCGTTTCGGTCCACTCTAAAA 633197 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||| ||||| || | | ||||||||||||| || || || | || ||| | Sbjct 633196 TCTTTTTGGCCCAATACATGCGCAGAAACCCGTGCATTTTGCCTTCCTTGACCAGCTGCA 633137 Query 119174 GTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTC 119216 | || || | |||||| ||| |||| || || | ||| || Sbjct 633136 GCTGGGCCGAGTTCCACAGATCGTCGTAGGTGCGCGAGTGCTC 633094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394084062960