Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2 558 4e-154
seq4 224 1e-53
>seq2
Length=27840087
Score = 558 bits (618), Expect = 4e-154
Identities = 1257/1870 (67%), Gaps = 28/1870 (1%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| ||||| |||||||| || |||| ||| |||| | || || |||| |
Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| ||||| | ||| ||||||||||| || || ||||| || || || |||||||||||
Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046
| | || || ||||||||| | ||||||||| || || | ||| |||| ||||
Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064
Query 53047 -GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103
| || |||| || || || |||| | | || || ||| || ||||| ||||
Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004
Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163
||| || | || |||||| | | || | || | || ||||| |||||||| ||
Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944
Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223
|||||| |||| | |||||||| || ||||| || || | ||||||||||| ||
Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884
Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283
||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | |||
Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824
Query 53284 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341
|| ||| | | | || ||||| ||| | ||||| ||||||||| | |||
Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766
Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400
|| | ||| || || || | | || || ||||| || || ||
Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707
Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460
|||||| || ||| ||||| |||||| || || || || || || || || || |||||
Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647
Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520
||| |||| || ||||| |||||| | || || | | ||| | | ||
Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587
Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580
|| ||||| || || ||||| || |||||||| ||||| | || | ||| || |
Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527
Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640
|| ||||||||| | ||| || ||||| ||||| || |||||||| | |||| | ||
Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467
Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACA 53696
| ||| || || || || || ||| ||| | || ||| | | |||||||
Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCG-TCACAAACA 27784408
Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756
| || | ||| ||||| |||| |||||| || |||| |||| | ||| ||||| |
Sbjct 27784407 TATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAA 27784348
Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816
||| || ||||| |||||||| || || || ||||| | ||||||||| || || |||
Sbjct 27784347 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 27784288
Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876
||||||| | |||||| | | ||| | || |||||||| || | || ||||| || |
Sbjct 27784287 TGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGA 27784228
Query 53877 TCGCTTTCCAGACGACAC-GAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCG 53932
| || ||| | || | ||||||| || | | |||| | ||| | |||| |||
Sbjct 27784227 TGGCAAACCAAA-GAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCA 27784172
Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992
||| |||| | |||||| || || |||||||||| | ||||| |||| |
Sbjct 27784171 TATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTA 27784112
Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052
| |||||||| || ||||| ||| | | | | | || ||||||||||| ||||||||
Sbjct 27784111 TGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGT 27784052
Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112
||||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| ||||||
Sbjct 27784051 ATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTA 27783992
Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172
|| || | || | | | ||| || ||||| || ||||| ||||| | | |||||
Sbjct 27783991 AGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCA 27783932
Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232
|| | ||| || |||||||| | || | ||| |||||| | ||||| ||||||
Sbjct 27783931 GGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATT 27783872
Query 54233 GG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291
|| | |||| ||||| || | || || || || | || || | || | || |||||
Sbjct 27783871 GGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAAT 27783813
Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351
| || || || || || |||||| || || || | ||||||| ||| |
Sbjct 27783812 ACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAAC 27783753
Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA 54410
| | | | || || || || |||| || || ||||| |||||||| |||||
Sbjct 27783752 TGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACA 27783694
Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470
||| ||||| | || | ||| ||| | || || || || || ||||| | |
Sbjct 27783693 ATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCT 27783634
Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530
|||| || | |||||| || || | || || || ||||| ||| || |||| |
Sbjct 27783633 CAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGG 27783574
Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590
|||||||||||| || ||||| |||||||| | || || |||||||| ||||| |
Sbjct 27783573 CGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAAT 27783514
Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650
| || || | || || || ||||| ||||| ||| || || || || || ||||
Sbjct 27783513 ACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAA 27783454
Query 54651 TAACTGAGTT 54660
|| | |||||
Sbjct 27783453 TAGCAGAGTT 27783444
>seq4
Length=23952536
Score = 224 bits (248), Expect = 1e-53
Identities = 562/844 (67%), Gaps = 21/844 (2%)
Strand=Plus/Plus
Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894
|| ||||| ||| ||||| || || ||| ||||| || ||||| || || || |
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954
|| || | ||||| || | ||||||| | ||| |||||| | || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014
|| | || | ||| || ||||| || ||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074
|| || | ||| || || ||||| | || ||||| ||||| ||||| | || || ||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 24075 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 24130
| || ||||| | || | | |||| | || | | || ||||| |||||
Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 24131 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189
|| ||| || || || || || | |||||||| | || || || ||||| || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249
| || |||||||| || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCGCTGTC- 24307
|||| ||||| || || || || || ||||| | ||| || ||| | || ||| ||
Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627
Query 24308 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366
||| | |||| | |||||||||||||| || ||| |||||||| || || |
Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687
Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426
|||| || ||||| | ||| | ||| ||| ||||||||| |||| | || |
Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747
Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486
|||| ||||| || | || || ||||| |||||||| || |||||||| | ||| ||||
Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807
Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546
| || || || || | || || || | | ||| ||||| || || || || ||
Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867
Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 24602
| ||||| || || | ||||| ||||| | |||| | | |||| |
Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGT 3358923
Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662
||| || | | |||||||| | |||||| |||||||| ||||| ||||| |||||
Sbjct 3358924 GCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCA 3358983
Query 24663 GCCT 24666
||||
Sbjct 3358984 GCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593698014409440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |