Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 558 4e-154 seq4 224 1e-53 >seq2 Length=27840087 Score = 558 bits (618), Expect = 4e-154 Identities = 1257/1870 (67%), Gaps = 28/1870 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||| |||||||| || |||| ||| |||| | || || |||| | Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064 Query 53047 -GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 | || |||| || || || |||| | | || || ||| || ||||| |||| Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| || | || |||||| | | || | || | || ||||| |||||||| || Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 |||||| |||| | |||||||| || ||||| || || | ||||||||||| || Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824 Query 53284 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 || ||| | | | || ||||| ||| | ||||| ||||||||| | ||| Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400 || | ||| || || || | | || || ||||| || || || Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 |||||| || ||| ||||| |||||| || || || || || || || || || ||||| Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520 ||| |||| || ||||| |||||| | || || | | ||| | | || Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || ||||| || || ||||| || |||||||| ||||| | || | ||| || | Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 || ||||||||| | ||| || ||||| ||||| || |||||||| | |||| | || Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACA 53696 | ||| || || || || || ||| ||| | || ||| | | ||||||| Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCG-TCACAAACA 27784408 Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756 | || | ||| ||||| |||| |||||| || |||| |||| | ||| ||||| | Sbjct 27784407 TATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAA 27784348 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| Sbjct 27784347 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 27784288 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 ||||||| | |||||| | | ||| | || |||||||| || | || ||||| || | Sbjct 27784287 TGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGA 27784228 Query 53877 TCGCTTTCCAGACGACAC-GAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCG 53932 | || ||| | || | ||||||| || | | |||| | ||| | |||| ||| Sbjct 27784227 TGGCAAACCAAA-GAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCA 27784172 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 ||| |||| | |||||| || || |||||||||| | ||||| |||| | Sbjct 27784171 TATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTA 27784112 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | |||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| Sbjct 27784111 TGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGT 27784052 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 ||||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| |||||| Sbjct 27784051 ATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTA 27783992 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 || || | || | | | ||| || ||||| || ||||| ||||| | | ||||| Sbjct 27783991 AGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCA 27783932 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || | ||| || |||||||| | || | ||| |||||| | ||||| |||||| Sbjct 27783931 GGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATT 27783872 Query 54233 GG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 || | |||| ||||| || | || || || || | || || | || | || ||||| Sbjct 27783871 GGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAAT 27783813 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 | || || || || || |||||| || || || | ||||||| ||| | Sbjct 27783812 ACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAAC 27783753 Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA 54410 | | | | || || || || |||| || || ||||| |||||||| ||||| Sbjct 27783752 TGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACA 27783694 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 ||| ||||| | || | ||| ||| | || || || || || ||||| | | Sbjct 27783693 ATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCT 27783634 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 |||| || | |||||| || || | || || || ||||| ||| || |||| | Sbjct 27783633 CAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGG 27783574 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 |||||||||||| || ||||| |||||||| | || || |||||||| ||||| | Sbjct 27783573 CGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAAT 27783514 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 | || || | || || || ||||| ||||| ||| || || || || || |||| Sbjct 27783513 ACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAA 27783454 Query 54651 TAACTGAGTT 54660 || | ||||| Sbjct 27783453 TAGCAGAGTT 27783444 >seq4 Length=23952536 Score = 224 bits (248), Expect = 1e-53 Identities = 562/844 (67%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || ||||| ||| ||||| || || ||| ||||| || ||||| || || || | Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || | ||||| || | ||||||| | ||| |||||| | || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 || | || | ||| || ||||| || ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || || | ||| || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 24075 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 24130 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 24131 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189 || ||| || || || || || | |||||||| | || || || ||||| || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCGCTGTC- 24307 |||| ||||| || || || || || ||||| | ||| || ||| | || ||| || Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627 Query 24308 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| | |||| | |||||||||||||| || ||| |||||||| || || | Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 |||| || ||||| | ||| | ||| ||| ||||||||| |||| | || | Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| ||||| || | || || ||||| |||||||| || |||||||| | ||| |||| Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | || || || || | || || || | | ||| ||||| || || || || || Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 24602 | ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGT 3358923 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| || | | |||||||| | |||||| |||||||| ||||| ||||| ||||| Sbjct 3358924 GCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCA 3358983 Query 24663 GCCT 24666 |||| Sbjct 3358984 GCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698014409440