Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 >seq6 Length=26536676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||||||||| ||| || || ||| | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || || || ||| | ||| |||||| Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| || ||||| ||| ||| || |||| ||||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| |||||| | ||| ||||| | || |||| || || Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGG 9461994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428319409743590