Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
seq6 104 2e-17
seq3 91.5 1e-13
>seq2
Length=27840087
Score = 134 bits (148), Expect = 1e-26
Identities = 173/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| ||||||||||||||||| |||||||| ||||| | |
Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||||||||| ||||| || | || || | |||||| || ||
Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || || ||||| |||||| || || | ||| || ||| ||||||
Sbjct 185477 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 185418
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTT 21187
|||| ||||||||||||||||| | ||||| || || |||||||||||| | || ||
Sbjct 185417 TCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGTAACTGTT 185359
>seq6
Length=26536676
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
|| || || || || | |||||||| |||||||| |||||||| || ||||| |||||
Sbjct 9461991 TTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCG 9462050
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| ||| || | | ||||||||||| ||||| || | || || | |||||| || |
Sbjct 9462051 GACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGG 9462110
Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125
|| | || |||||||| |||||| || || | | | || || ||||||
Sbjct 9462111 GGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCG 9462170
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||| ||||| || || || ||||| || || |||||
Sbjct 9462171 ACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
Score = 98.7 bits (108), Expect = 8e-16
Identities = 165/239 (69%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||| |||| ||| | || |||||||| || ||||| ||||| | |
Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||||||||| ||||| || | || || | |||||| || |||
Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | || || ||||||
Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACC 9462401
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTT 21187
|||| || ||||||||||| || || || ||||| || || ||||| || ||||||
Sbjct 9462402 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT---TCTCTT 9462457
>seq3
Length=22052390
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 29095 CCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTC 29154
|||| | || || |||| ||| ||| |||||| | ||||||||||| || |||||| |
Sbjct 5974993 CCAGAGAGCATGCTGCTCCCAGGGCTCGTCGTTGTCGTCCCAATCCTTGAGGCCGCCGCC 5974934
Query 29155 GCAGCAAAAGCACCGCGT-CTTG-TCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCC 29212
||| | || || |||| | | ||||| ||||| |||||||| || ||||||||
Sbjct 5974933 GCAACTGAA--ACAGCGTACGCGATCGCCGACCCCAGTATAAAAGAAACCCGCCTCGGCG 5974876
Query 29213 AACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCG 29272
| || | ||| ||| |||| ||| ||||| ||| | ||| |||||| ||| ||
Sbjct 5974875 AGCTGCTGTGGCTTCTGCTTCATGTTGCGCGGCCAATCCTCGAAGCTGCGCAGACGTGCC 5974816
Query 29273 GCTTCCGTGGCATACT 29288
| || |||||||||
Sbjct 5974815 GACTCGATGGCATACT 5974800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422242845109448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |