Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 334 8e-87
seq2 141 1e-28
seq6 123 3e-23
seq3 116 4e-21
>seq4
Length=23952536
Score = 334 bits (370), Expect = 8e-87
Identities = 545/782 (70%), Gaps = 2/782 (0%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| ||||| || |||||||| || || |||||||| || || || ||| || |||||
Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||| || || | || |||||||| || || ||| || ||||| ||||| || ||||
Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
|| ||| ||||| || || |||||||| |||||||| ||| ||||||||||| |
Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
|||| || || || ||||| |||||||| |||||||||||||| ||||||||||| ||||
Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954
| || ||||| || || | | | | |||| | | |||| || |
Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014
|||| || || ||||| ||||| |||||||| |||||||| ||||| |
Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628
Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074
| | ||| ||| |||||| | | | || ||||| ||||| ||||| ||||||
Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568
Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134
|| ||||| || ||| | || |||||||| |||||||| || || |||||||| ||||
Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508
Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT-TTG 117193
| ||| ||| ||| | ||||| | |||||||| ||||||| ||||||| |||| ||
Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTG-CTGTGATG 3358449
Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253
||||| |||||||||||| || || ||| | |||| ||| |||||| || | ||
Sbjct 3358448 ATGTTCCGGCATTTGGTGCAACGTCCTAGCCGTGAGCGCATCATTGAGATCATCTCTGAT 3358389
Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTC 117313
|| || |||| ||||| || ||||| || || ||||| || || | || |
Sbjct 3358388 GCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGCATG 3358329
Query 117314 AATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTG 117373
||||| | | |||||| | || || || || || || || | ||| || | || ||
Sbjct 3358328 AATTGTGCATTGATGTCCGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTC 3358269
Query 117374 GTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTG 117433
| | | ||| |||||| ||| || || | ||||||| | | ||||| ||
Sbjct 3358268 GGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTG 3358209
Query 117434 GA 117435
||
Sbjct 3358208 GA 3358207
>seq2
Length=27840087
Score = 141 bits (156), Expect = 1e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| ||||| ||||| ||||| ||||| || | || ||||| ||
Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | ||||||||||| ||||| | ||
Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 185487
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 185488 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 185547
Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892
||||| ||||||||| |||| ||||
Sbjct 185548 AACATTCAGAAGGAGTCCACTTTGCA 185573
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || ||||| || ||||| || |||||||| | || |||||| | |
Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | | |||| | || || | |||||||| || || || | || ||
Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| || |||| || | ||||| || |||||||||
Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||| || ||| | || |||| | ||| | |||
Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGC 14207457
>seq6
Length=26536676
Score = 123 bits (136), Expect = 3e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||||||||||||| | || ||||| || |
Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||| ||||| || ||| | || |||
Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| |||||||| || | ||||| || ||||||||||
Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || ||||
Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCA 9462018
Score = 122 bits (134), Expect = 9e-23
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||| ||||| || ||||| || || | || ||||| |||||||| | || || ||
Sbjct 9462453 GAAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGC 9462394
Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
|| | |||| | | ||| | |||| || || | ||||| ||||| || ||| | |
Sbjct 9462393 CCTCGGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAG 9462334
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
| ||||| || || |||| ||| ||||| |||||||| || | ||||| || |||||
Sbjct 9462333 ATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACT 9462274
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
| ||||||||||||||| | || || ||||| ||
Sbjct 9462273 AYAACATCCAGAAGGAGTCGACCCTTCATCTGGT 9462240
>seq3
Length=22052390
Score = 116 bits (128), Expect = 4e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| ||||| | ||||| || ||||||||| | || || || |
Sbjct 1974942 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCT 1975001
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||| | | | | |||| |||||| || |||| || || ||||| || || | ||
Sbjct 1975002 TCCGATACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| || || |||| ||| ||||| || ||||| || | |||||| | |||||
Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTA 1975120
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| |||||||||||| | || || ||||| ||
Sbjct 1975121 CAATATCCAGAAGGAGTCGACCCTTCATCTGGT 1975153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515198732917280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |