Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 334 8e-87 seq2 141 1e-28 seq6 123 3e-23 seq3 116 4e-21 >seq4 Length=23952536 Score = 334 bits (370), Expect = 8e-87 Identities = 545/782 (70%), Gaps = 2/782 (0%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || |||||||| || || |||||||| || || || ||| || ||||| Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || || | || |||||||| || || ||| || ||||| ||||| || |||| Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| ||||| || || |||||||| |||||||| ||| ||||||||||| | Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 |||| || || || ||||| |||||||| |||||||||||||| ||||||||||| |||| Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | || ||||| || || | | | | |||| | | |||| || | Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||| || || ||||| ||||| |||||||| |||||||| ||||| | Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 | | ||| ||| |||||| | | | || ||||| ||||| ||||| |||||| Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 || ||||| || ||| | || |||||||| |||||||| || || |||||||| |||| Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT-TTG 117193 | ||| ||| ||| | ||||| | |||||||| ||||||| ||||||| |||| || Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTG-CTGTGATG 3358449 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 ||||| |||||||||||| || || ||| | |||| ||| |||||| || | || Sbjct 3358448 ATGTTCCGGCATTTGGTGCAACGTCCTAGCCGTGAGCGCATCATTGAGATCATCTCTGAT 3358389 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTC 117313 || || |||| ||||| || ||||| || || ||||| || || | || | Sbjct 3358388 GCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGCATG 3358329 Query 117314 AATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTG 117373 ||||| | | |||||| | || || || || || || || | ||| || | || || Sbjct 3358328 AATTGTGCATTGATGTCCGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTC 3358269 Query 117374 GTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTG 117433 | | | ||| |||||| ||| || || | ||||||| | | ||||| || Sbjct 3358268 GGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTG 3358209 Query 117434 GA 117435 || Sbjct 3358208 GA 3358207 >seq2 Length=27840087 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||||||||| ||||| | || Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 185487 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 185488 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 185547 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||||||| |||| |||| Sbjct 185548 AACATTCAGAAGGAGTCCACTTTGCA 185573 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || ||||| || |||||||| | || |||||| | | Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| | || || | |||||||| || || || | || || Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| || |||| || | ||||| || ||||||||| Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||| || ||| | || |||| | ||| | ||| Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGC 14207457 >seq6 Length=26536676 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || ||||| || | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| || ||| | || ||| Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || |||| Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCA 9462018 Score = 122 bits (134), Expect = 9e-23 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || ||||| |||||||| | || || || Sbjct 9462453 GAAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGC 9462394 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | |||| | | ||| | |||| || || | ||||| ||||| || ||| | | Sbjct 9462393 CCTCGGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAG 9462334 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||| Sbjct 9462333 ATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACT 9462274 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||||||||||||| | || || ||||| || Sbjct 9462273 AYAACATCCAGAAGGAGTCGACCCTTCATCTGGT 9462240 >seq3 Length=22052390 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| | ||||| || ||||||||| | || || || | Sbjct 1974942 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCT 1975001 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | | |||| |||||| || |||| || || ||||| || || | || Sbjct 1975002 TCCGATACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| || ||||| || | |||||| | ||||| Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTA 1975120 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||||||| | || || ||||| || Sbjct 1975121 CAATATCCAGAAGGAGTCGACCCTTCATCTGGT 1975153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198732917280