Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 3e-34
seq2 140 3e-28
seq3 96.9 3e-15
>seq6
Length=26536676
Score = 159 bits (176), Expect = 3e-34
Identities = 162/211 (77%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | |||||||| || || |||||||| ||| || |||||| ||||||
Sbjct 9462011 CACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 9462070
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| |||| |||||||||||||| || || || ||||||||||||
Sbjct 9462071 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 9462130
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||||| | || | |||||||| | ||||||||| | ||| | |||||
Sbjct 9462131 GATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTT 9462190
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| |||| ||| || || || |||||||||
Sbjct 9462191 GCCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221
Score = 132 bits (146), Expect = 4e-26
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||| || ||| || |||||| |||||| ||||| || |||
Sbjct 9462252 GTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCA 9462311
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||||||||| || || || |||||||||||| || || |||
Sbjct 9462312 GCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTA 9462371
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||| | |||||||| | ||| ||||| | || | || ||||| |||| |||
Sbjct 9462372 ACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTC 9462431
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 9462432 TTGACGAAGATCTGCAT 9462448
>seq2
Length=27840087
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || ||||||||||| ||| || |||||| ||||||
Sbjct 185580 CACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 185521
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| |||||||||||||| || || || ||||| ||||||
Sbjct 185520 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTG 185461
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | | ||||||||| | || | || ||
Sbjct 185460 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTT 185401
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| |||||||| || || || |||||
Sbjct 185400 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||||||||| |||||||| ||| | |||||| ||| ||
Sbjct 14207463 CACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 14207522
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| || || ||||| |||| |||||||||||||| ||||| || || || |||||
Sbjct 14207523 CAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14207582
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | |||| ||| |||| |||||||| | || | || ||
Sbjct 14207583 GATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14207642
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| ||||| ||||||||
Sbjct 14207643 ACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
>seq3
Length=22052390
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | |||||||| |||||||||||||||||| || ||||| ||| ||
Sbjct 1975441 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTCC 1975382
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || || ||| |||| |||||||||||||| || || || || ||||||||
Sbjct 1975381 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 1975326
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || || ||||| || || ||||| ||| || || || || ||
Sbjct 1975141 GTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCG 1975082
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||||||||| || || || |||||||| ||| ||| || ||
Sbjct 1975081 GCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTG 1975022
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| || | ||| ||||| | ||| | || || || |||| ||||
Sbjct 1975021 ACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTT 1974962
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 1974961 TTAACGAAGATCTGCAT 1974945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433813596935176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |