Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4 140 6e-28 >seq4 Length=23952536 Score = 140 bits (154), Expect = 6e-28 Identities = 208/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 189448 TCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACG 189507 ||| |||||| || | || ||||| |||| | ||||| |||||||| | ||| | || Sbjct 633117 TCTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTTCTGCG 633176 Query 189508 AATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGC-TTTGAGTT 189566 ||||||||||| || ||||| | || ||||| ||| || ||| | || ||||| | Sbjct 633177 CATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAG-T 633235 Query 189567 ATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTA 189625 |||| || | |||||| |||||||| || || || ||| ||||| || || ||||| Sbjct 633236 ATAGCATATTATTGAACGACAAGTACAGTCTGGATGG-ACGTGATCCGAATGGCTACGTT 633294 Query 189626 GGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTT 189685 ||||| |||||||| || | || | ||||| || ||||| || | |||||||| Sbjct 633295 GGTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTT 633354 Query 189686 GGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 || ||||| | |||||||| ||| | | | ||| || |||||||| Sbjct 633355 GGTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGT 633404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923160126007120