Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 9e-17
seq6 100 3e-16
seq4 96.9 4e-15
seq374 91.5 2e-13
>seq2
Length=27840087
Score = 102 bits (112), Expect = 9e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| ||||| ||| |||||| ||||| ||||| || | |||||| || |
Sbjct 185586 ACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCC 185527
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || ||||| || || |||||||| || | || | | ||| ||
Sbjct 185526 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTT 185467
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| || | | ||||| | || || || | || ||
Sbjct 185466 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAAT 185407
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||| ||||| || || || || || ||||||||||||||
Sbjct 185406 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 23242428 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 23242369
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 23242368 CTATACTATCGAGGAT 23242353
Score = 95.1 bits (104), Expect = 1e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
|| || |||||| || | |||||| |||||| ||||||||||||||||||||| |||||
Sbjct 23252279 AACATATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 23252220
Query 60118 CACCACTATACTACCGAGGA 60137
|||||||||||| ||||||
Sbjct 23252219 AACCACTATACTATCGAGGA 23252200
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 23252567 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 23252626
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 23252627 ACTATACTATCGAGGA 23252642
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23242652 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23242711
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 23242712 ATACTATCGAGGA 23242724
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23496546 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23496605
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 23496606 ATACTATCGAGGA 23496618
>seq6
Length=26536676
Score = 100 bits (110), Expect = 3e-16
Identities = 162/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011
|||| || || | || ||| | |||||| ||||| || |||||| || || ||||| |
Sbjct 9461990 ATTG-CCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGT 9462048
Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071
| | |||||| || | || || |||||||| |||||||| || || |||||||| || |
Sbjct 9462049 CGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTG 9462108
Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131
|| | | ||||||||| ||| || || | || | | ||||| | |
Sbjct 9462109 GGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCT 9462168
Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || | |||||||||||||| || | ||||| || ||||| |||||
Sbjct 9462169 CGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
>seq4
Length=23952536
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 18949504 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 18949445
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||||||
Sbjct 18949444 ATACTATCGAGGATTG 18949429
>seq374
Length=6165
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 490 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 431
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 430 TACTATCGAGGAT 418
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 60
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 61 TACTATCGAGGA 72
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571794884545840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |