Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4 192 5e-44
>seq4
Length=23952536
Score = 192 bits (212), Expect = 5e-44
Identities = 584/895 (65%), Gaps = 12/895 (1%)
Strand=Plus/Plus
Query 15881 TAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGAC 15940
||| |||| ||||| ||| || | ||| ||||| ||| ||| || | || |
Sbjct 3358099 TAATTTTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCC 3358158
Query 15941 ATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000
|| ||||||||| | |||| | || || ||||| || || || || || | || ||
Sbjct 3358159 ATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATC 3358218
Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060
| |||||||| || ||||| || | | ||| ||| | || | ||||| |
Sbjct 3358219 ATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACC 3358278
Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
|| | | |||||| |||||||| ||||||| ||| || |||| ||||| || ||
Sbjct 3358279 AACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATC 3358338
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
||||| || || | || ||||| | ||| | || || || |||| || ||| |||
Sbjct 3358339 AATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATG 3358398
Query 16181 ATATCTCTTACTACACTATTTAACGG--AGG--GTTTAAT-AAGTGTTTAAACATTATAC 16235
|| || | | | | || |||| ||| ||| | || || ||||| ||
Sbjct 3358399 ATCTCAATGA-TGCGCTC----ACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCA 3358453
Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295
|||||| ||||||||||| || ||||| | || ||||| || || || || ||||
Sbjct 3358454 CAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGAC 3358513
Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355
| ||||| || || ||||| || | |||||| || | |||||| ||| |||||| |
Sbjct 3358514 CGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGA 3358573
Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC-TAtttttactttct 16414
| || || || || || || |||| | || ||| || | |||| || |
Sbjct 3358574 TTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCC-AAAGTTCGCCGCCTTCGATGAA 3358632
Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474
||||| ||||||| || ||| | || ||| | ||| | || || |||||
Sbjct 3358633 ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTG 3358692
Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534
|| | ||||| ||| | ||| |||||| ||||| || || | || |||||
Sbjct 3358693 AACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATC 3358752
Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594
|| || || | ||||||||| || || ||||| ||||| || || | |||||||| ||||
Sbjct 3358753 TCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATT 3358812
Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654
|| || || | || | || | | || || ||||| || |||||| || |||
Sbjct 3358813 TGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCA 3358872
Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714
|| || || || | || ||||| | |||||||| | | | ||||||
Sbjct 3358873 AAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCG 3358932
Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
| || ||||| || | ||| |||||||| |||||||| || || || ||||||
Sbjct 3358933 GTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462493626710800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |