Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 192 5e-44 >seq4 Length=23952536 Score = 192 bits (212), Expect = 5e-44 Identities = 584/895 (65%), Gaps = 12/895 (1%) Strand=Plus/Plus Query 15881 TAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGAC 15940 ||| |||| ||||| ||| || | ||| ||||| ||| ||| || | || | Sbjct 3358099 TAATTTTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCC 3358158 Query 15941 ATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 || ||||||||| | |||| | || || ||||| || || || || || | || || Sbjct 3358159 ATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATC 3358218 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 | |||||||| || ||||| || | | ||| ||| | || | ||||| | Sbjct 3358219 ATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACC 3358278 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | | |||||| |||||||| ||||||| ||| || |||| ||||| || || Sbjct 3358279 AACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATC 3358338 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 ||||| || || | || ||||| | ||| | || || || |||| || ||| ||| Sbjct 3358339 AATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATG 3358398 Query 16181 ATATCTCTTACTACACTATTTAACGG--AGG--GTTTAAT-AAGTGTTTAAACATTATAC 16235 || || | | | | || |||| ||| ||| | || || ||||| || Sbjct 3358399 ATCTCAATGA-TGCGCTC----ACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCA 3358453 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 |||||| ||||||||||| || ||||| | || ||||| || || || || |||| Sbjct 3358454 CAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGAC 3358513 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| || || ||||| || | |||||| || | |||||| ||| |||||| | Sbjct 3358514 CGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGA 3358573 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC-TAtttttactttct 16414 | || || || || || || |||| | || ||| || | |||| || | Sbjct 3358574 TTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCC-AAAGTTCGCCGCCTTCGATGAA 3358632 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||||| || ||| | || ||| | ||| | || || ||||| Sbjct 3358633 ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTG 3358692 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | ||||| ||| | ||| |||||| ||||| || || | || ||||| Sbjct 3358693 AACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATC 3358752 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || || | ||||||||| || || ||||| ||||| || || | |||||||| |||| Sbjct 3358753 TCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATT 3358812 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | || | || | | || || ||||| || |||||| || ||| Sbjct 3358813 TGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCA 3358872 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 || || || || | || ||||| | |||||||| | | | |||||| Sbjct 3358873 AAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCG 3358932 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || ||||| || | ||| |||||||| |||||||| || || || |||||| Sbjct 3358933 GTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493626710800