Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 8e-22
seq2 118 8e-22
seq3 87.8 1e-12
>seq6
Length=26536676
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| || ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 9462012 ACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 9462071
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| || || || || | ||||||||||||
Sbjct 9462072 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462131
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || |||||| | | | | ||||| ||| ||||||| ||| || || |||
Sbjct 9462132 ATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTG 9462191
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||| || ||||| ||||||
Sbjct 9462192 CCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221
Score = 102 bits (112), Expect = 6e-17
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||| |||||| ||| ||| | || ||||| || || || |||||
Sbjct 9462257 CTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 9462316
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| || || || || | |||||||||||| || || ||||||
Sbjct 9462317 GATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATT 9462376
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| ||| ||||||| || || |||||||| |||| |||||| ||
Sbjct 9462377 TTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGAC 9462436
Query 45325 AAAGATTTGCATGTT 45339
||||| ||||| ||
Sbjct 9462437 GAAGATCTGCATATT 9462451
>seq2
Length=27840087
Score = 118 bits (130), Expect = 8e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| ||| |||||||||||||||||||||| ||| ||| | || |||
Sbjct 185579 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 185520
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| || || || || | ||||| |||||
Sbjct 185519 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGG 185460
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||||| ||||||
Sbjct 185459 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTG 185400
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| || ||||| || || ||||||||||| |||
Sbjct 185399 CCGGTGAGAGTTTTAACGAAGATTTGCATTTTG 185367
>seq3
Length=22052390
Score = 87.8 bits (96), Expect = 1e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| || || || |||||| ||||||||||| ||| ||| |||| | || ||
Sbjct 1975442 TACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTC 1975383
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|||||| || |||||||| |||| ||||| || || || || | ||| |||||||||
Sbjct 1975382 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTG 1975323
Query 45247 AATTTT 45252
||| ||
Sbjct 1975322 AATCTT 1975317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395059897996738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |