Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 145 7e-30 >seq4 Length=23952536 Score = 145 bits (160), Expect = 7e-30 Identities = 539/832 (65%), Gaps = 22/832 (3%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 |||||||| ||||||||| | |||| |||| || ||||||||||| || || ||||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || || | |||||||| |||||||| | | | | | ||| || ||| ||| Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | | | | |||||||| || |||||||| | ||||| || |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || | ||| || || | || || | ||| |||| || || | ||||| || Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC- 3358391 Query 14144 TTTATA-ATAATCGTAATAAT---TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199 | | || ||| ||| || ||| |||| | | | ||| || || Sbjct 3358392 ---AGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 14200 TA-AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | ||| ||||| |||||||| | |||||| || | || | || || || || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | | || ||||||| || ||||| || | |||||| || | || || || || Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTT 14375 |||| |||||||| || ||||| ||||| || | || || ||||| || || || Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGC--CTT 3358625 Query 14376 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435 | | || ||||| ||||| || | ||| || | | ||||||||||| Sbjct 3358626 CGAT-GAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAA 3358684 Query 14436 TAGCATTAAATAAATGTTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTA 14492 | ||||| || | || ||| ||| || | | | | | ||| |||||||| || || | Sbjct 3358685 TGGCATTGAACAGATAATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCA 3358741 Query 14493 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG 14552 ||| ||||| || ||||| | || ||||| || || ||||| ||||| ||||| | || Sbjct 3358742 CGCTGTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAG 3358801 Query 14553 CTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 |||| | ||| ||||| | || | ||| | | ||| |||||||| || |||| Sbjct 3358802 CTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCAT 3358861 Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672 | || ||||| || || | | | ||||||| |||| | || | | Sbjct 3358862 CGGAGGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAAC 3358921 Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | ||| |||| || || ||||| ||||| || || || || ||||| || Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326438821040