Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq4 145 7e-30
>seq4
Length=23952536
Score = 145 bits (160), Expect = 7e-30
Identities = 539/832 (65%), Gaps = 22/832 (3%)
Strand=Plus/Plus
Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963
|||||||| ||||||||| | |||| |||| || ||||||||||| || || |||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023
|| || | |||||||| |||||||| | | | | | ||| || ||| |||
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083
|| | | | | |||||||| || |||||||| | ||||| || ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143
|| || | ||| || || | || || | ||| |||| || || | ||||| ||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC- 3358391
Query 14144 TTTATA-ATAATCGTAATAAT---TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199
| | || ||| ||| || ||| |||| | | | ||| || ||
Sbjct 3358392 ---AGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 14200 TA-AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258
| ||| ||||| |||||||| | |||||| || | || | || || || || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318
| | || ||||||| || ||||| || | |||||| || | || || || ||
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567
Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTT 14375
|||| |||||||| || ||||| ||||| || | || || ||||| || || ||
Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGC--CTT 3358625
Query 14376 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435
| | || ||||| ||||| || | ||| || | | |||||||||||
Sbjct 3358626 CGAT-GAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAA 3358684
Query 14436 TAGCATTAAATAAATGTTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTA 14492
| ||||| || | || ||| ||| || | | | | | ||| |||||||| || || |
Sbjct 3358685 TGGCATTGAACAGATAATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCA 3358741
Query 14493 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG 14552
||| ||||| || ||||| | || ||||| || || ||||| ||||| ||||| | ||
Sbjct 3358742 CGCTGTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAG 3358801
Query 14553 CTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612
|||| | ||| ||||| | || | ||| | | ||| |||||||| || ||||
Sbjct 3358802 CTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCAT 3358861
Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672
| || ||||| || || | | | ||||||| |||| | || | |
Sbjct 3358862 CGGAGGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAAC 3358921
Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724
| ||| |||| || || ||||| ||||| || || || || ||||| ||
Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482326438821040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |