Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 154 3e-32 >seq4 Length=23952536 Score = 154 bits (170), Expect = 3e-32 Identities = 301/442 (68%), Gaps = 7/442 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| || ||||| || || ||||||||||||||||| || || || || || ||| Sbjct 3358597 TTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGC 3358538 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| ||||| |||| |||||||||||| || || | |||| Sbjct 3358537 TGAAGAAACGTGGTCTGATGCCCGGTCTGACCTTCTCCAATGAGTTGATCTCACGCGACG 3358478 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC--CCC 102096 | || | ||| | |||||||| ||| |||| || |||| || || || Sbjct 3358477 AGGGCTTGCATTGTGACTTTGCTGTGATGATGTTCC----GGCATTTGGTGCAACGTCCT 3358422 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | | | || | || |||| || || |||| || || ||||| ||||| ||||| Sbjct 3358421 AGCC-GTGAGCGCATCATTGAGATCATCTCTGATGCTGTTACCATTGAGCAAGAGTTTCT 3358363 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||||| | | ||||| || ||||| | || ||||| || |||||| | |||| || Sbjct 3358362 CACAGATGCTCTGCCCGTCAAATTGATTGGCATGAATTGTGCATTGATGTCCGAGTATAT 3358303 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||||||||| || ||| || ||||| ||| | || | | || ||| ||| | Sbjct 3358302 TGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAA 3358243 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || ||| | || ||||| | || || || || ||||| ||||| || || || Sbjct 3358242 GAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTCGAGAA 3358183 Query 102337 GAGAGTCGCCGAGTATCAACGT 102358 | ||| | ||| ||||||||| Sbjct 3358182 AAAAGTTGGCGAATATCAACGT 3358161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989543705994990