Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 576 2e-159 seq4 239 6e-58 >seq2 Length=27840087 Score = 576 bits (638), Expect = 2e-159 Identities = 1257/1866 (67%), Gaps = 20/1866 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||| |||||||| || ||||| ||| |||| | || || |||| | Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62284 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064 Query 62285 -GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 | || |||| || || || |||| | | || || ||| || ||||| |||| Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| || | || |||||| | | || | || |||| ||||| || ||||| || Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 |||||| |||| | |||||||| || ||||| || || | |||||||||||| || Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 ||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824 Query 62522 GTATGTTCTGATTTT-ATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 || ||| | | | || ||||| || | ||||| ||||||||| | ||| Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766 Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATA 62638 ||| || | ||| || || || | | || || ||||| || ||||| Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62698 |||||| || ||| ||||| || ||| || || || || || || || || || ||||| Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647 Query 62699 AAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAAT 62758 || |||| || ||||| |||||| | || || | | ||| | | || Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587 Query 62759 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62818 || |||||||| || ||||| || |||||||| ||||| | || | ||| || | Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527 Query 62819 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878 || ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | || Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467 Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACAT 62935 | ||| || || || || || ||| ||| | | | | | | |||||||| Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 27784407 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || | ||| | ||| |||| ||||||||| |||| |||| | ||| ||||| | Sbjct 27784406 ATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 27784347 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 ||| || ||||| |||||||| || || |||||||| | ||||||||| || || ||| | Sbjct 27784346 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 27784287 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 |||||| | |||||| | | ||| | ||||||||||| || | |||||||| || || Sbjct 27784286 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTATA 63174 || ||| | | ||||||| || | | |||| | ||| | ||| ||| ||| Sbjct 27784226 GGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCCT-CTCGTTCATATT 27784168 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234 |||| | ||| || || || |||||||||| | | ||| |||| || | Sbjct 27784167 TGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTG 27784108 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 ||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| |||| Sbjct 27784107 GACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCC 27784048 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | | || | ||| ||||| | || | ||| ||||| ||||| ||||| |||||||| | Sbjct 27784047 ACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGT 27783988 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | | || | | | ||| || ||||| || ||||| ||||| || | ||||||| | Sbjct 27783987 CCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTC 27783928 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-A 63473 ||| || |||||||| | || | ||| |||||| | ||||| |||||||| | Sbjct 27783927 TTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGGTA 27783868 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 |||| || ||||| | || || || || | || || || | || |||||| Sbjct 27783867 CTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAG 27783809 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || || || || |||||| || || || | ||||||| ||| | | Sbjct 27783808 TGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGAT 27783749 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTG 63652 | | | || ||||| || |||| | || ||||| |||||||| ||||| ||| Sbjct 27783748 TTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTG 27783690 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 ||||| | || | ||| ||| | || || || || || ||||| | ||||| Sbjct 27783689 TGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGA 27783630 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 || | |||||| || |||| || || || ||||| ||| || |||| ||||| Sbjct 27783629 TAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGAC 27783570 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||||| || ||||| |||||||| | ||||| |||||||| | ||| || || Sbjct 27783569 ACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGA 27783510 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 || | || || || ||||| ||||| ||| || || || || || |||||| | Sbjct 27783509 CCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGC 27783450 Query 63893 CGAATT 63898 || || Sbjct 27783449 AGAGTT 27783444 >seq4 Length=23952536 Score = 239 bits (264), Expect = 6e-58 Identities = 565/843 (67%), Gaps = 19/843 (2%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 || ||||| ||| ||||| || || ||| ||||| || ||||| || || |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | ||||| || || ||||| | |||||| ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | || | ||| || || ||||| ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | ||| || || ||||| | || ||||| ||||| ||||||| || |||| Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 33522 GTTATAATAAATCTAACGGTTTCTTCAC---TCGGTGGATGTAATAAATGTTTAAACATC 33578 | || || || || | | |||| | || | || | ||||| |||||| Sbjct 3358393 GAGATGATC--TC-AATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATC 3358449 Query 33579 AA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 | ||| || || || || |||| |||||||| | || || || || || || || Sbjct 3358450 ATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGT 3358508 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| || ||||| || || |||||||| || || || || || ||| Sbjct 3358509 CAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAA 3358568 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTC-A 33755 ||||||||| || || ||||| || ||||| | |||||| ||| | || ||| || | Sbjct 3358569 GAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGA 3358628 Query 33756 TGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || | |||| | |||||||||||||| || ||| ||||| ||||| ||||| Sbjct 3358629 TGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGC 3358688 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| || ||||| | ||| | ||| ||| ||| |||||||||| | || || Sbjct 3358689 ATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTA 3358748 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| ||||| || | || || ||||| || ||||| || |||||||| | ||| ||||| Sbjct 3358749 CATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGT 3358808 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || ||||| || | || || || | | ||| ||||| || || ||||| ||| Sbjct 3358809 TATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGC 3358868 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----T 34050 ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3358869 GGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGTG 3358924 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || | | |||||||| | |||||| |||||||| ||||| ||||| ||||| | Sbjct 3358925 CCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAG 3358984 Query 34111 CCT 34113 ||| Sbjct 3358985 CCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792580495840