Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2 576 2e-159
seq4 239 6e-58
>seq2
Length=27840087
Score = 576 bits (638), Expect = 2e-159
Identities = 1257/1866 (67%), Gaps = 20/1866 (1%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| ||||| |||||||| || ||||| ||| |||| | || || |||| |
Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183
Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225
|| ||||| | ||| ||||||||||| || || ||||| || || || |||||||||||
Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123
Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62284
| | || || ||||||||| | ||||||||| || || | ||| |||| ||||
Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064
Query 62285 -GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
| || |||| || || || |||| | | || || ||| || ||||| ||||
Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| || | || |||||| | | || | || |||| ||||| || ||||| ||
Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461
|||||| |||| | |||||||| || ||||| || || | |||||||||||| ||
Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884
Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | |||
Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824
Query 62522 GTATGTTCTGATTTT-ATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579
|| ||| | | | || ||||| || | ||||| ||||||||| | |||
Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766
Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATA 62638
||| || | ||| || || || | | || || ||||| || |||||
Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707
Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62698
|||||| || ||| ||||| || ||| || || || || || || || || || |||||
Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647
Query 62699 AAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAAT 62758
|| |||| || ||||| |||||| | || || | | ||| | | ||
Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587
Query 62759 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62818
|| |||||||| || ||||| || |||||||| ||||| | || | ||| || |
Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527
Query 62819 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878
|| ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | ||
Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467
Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACAT 62935
| ||| || || || || || ||| ||| | | | | | | ||||||||
Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 27784407
Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995
|| | ||| | ||| |||| ||||||||| |||| |||| | ||| ||||| |
Sbjct 27784406 ATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 27784347
Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055
||| || ||||| |||||||| || || |||||||| | ||||||||| || || ||| |
Sbjct 27784346 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 27784287
Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115
|||||| | |||||| | | ||| | ||||||||||| || | |||||||| || ||
Sbjct 27784286 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227
Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTATA 63174
|| ||| | | ||||||| || | | |||| | ||| | ||| ||| |||
Sbjct 27784226 GGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCCT-CTCGTTCATATT 27784168
Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234
|||| | ||| || || || |||||||||| | | ||| |||| || |
Sbjct 27784167 TGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTG 27784108
Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294
||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| ||||
Sbjct 27784107 GACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCC 27784048
Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354
| | || | ||| ||||| | || | ||| ||||| ||||| ||||| |||||||| |
Sbjct 27784047 ACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGT 27783988
Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414
| | || | | | ||| || ||||| || ||||| ||||| || | ||||||| |
Sbjct 27783987 CCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTC 27783928
Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-A 63473
||| || |||||||| | || | ||| |||||| | ||||| |||||||| |
Sbjct 27783927 TTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGGTA 27783868
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533
|||| || ||||| | || || || || | || || || | || ||||||
Sbjct 27783867 CTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAG 27783809
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
|| || || || || |||||| || || || | ||||||| ||| | |
Sbjct 27783808 TGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGAT 27783749
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTG 63652
| | | || ||||| || |||| | || ||||| |||||||| ||||| |||
Sbjct 27783748 TTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTG 27783690
Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712
||||| | || | ||| ||| | || || || || || ||||| | |||||
Sbjct 27783689 TGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGA 27783630
Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772
|| | |||||| || |||| || || || ||||| ||| || |||| |||||
Sbjct 27783629 TAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGAC 27783570
Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832
|||||||| || ||||| |||||||| | ||||| |||||||| | ||| || ||
Sbjct 27783569 ACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGA 27783510
Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892
|| | || || || ||||| ||||| ||| || || || || || |||||| |
Sbjct 27783509 CCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGC 27783450
Query 63893 CGAATT 63898
|| ||
Sbjct 27783449 AGAGTT 27783444
>seq4
Length=23952536
Score = 239 bits (264), Expect = 6e-58
Identities = 565/843 (67%), Gaps = 19/843 (2%)
Strand=Plus/Plus
Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341
|| ||||| ||| ||||| || || ||| ||||| || ||||| || || ||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401
|| || | ||||| || || ||||| | |||||| ||||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461
|| | || | ||| || || ||||| ||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521
|| || | ||| || || ||||| | || ||||| ||||| ||||||| || ||||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 33522 GTTATAATAAATCTAACGGTTTCTTCAC---TCGGTGGATGTAATAAATGTTTAAACATC 33578
| || || || || | | |||| | || | || | ||||| ||||||
Sbjct 3358393 GAGATGATC--TC-AATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATC 3358449
Query 33579 AA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
| ||| || || || || |||| |||||||| | || || || || || || ||
Sbjct 3358450 ATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGT 3358508
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
|| |||||||| || ||||| || || |||||||| || || || || || |||
Sbjct 3358509 CAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAA 3358568
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTC-A 33755
||||||||| || || ||||| || ||||| | |||||| ||| | || ||| || |
Sbjct 3358569 GAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGA 3358628
Query 33756 TGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|| | |||| | |||||||||||||| || ||| ||||| ||||| |||||
Sbjct 3358629 TGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGC 3358688
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
||| || ||||| | ||| | ||| ||| ||| |||||||||| | || ||
Sbjct 3358689 ATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTA 3358748
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| ||||| || | || || ||||| || ||||| || |||||||| | ||| |||||
Sbjct 3358749 CATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGT 3358808
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|| ||||| || | || || || | | ||| ||||| || || ||||| |||
Sbjct 3358809 TATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGC 3358868
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----T 34050
||||| || || | ||||| ||||| | |||| | | |||| |
Sbjct 3358869 GGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGTG 3358924
Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110
||| || | | |||||||| | |||||| |||||||| ||||| ||||| ||||| |
Sbjct 3358925 CCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAG 3358984
Query 34111 CCT 34113
|||
Sbjct 3358985 CCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629792580495840
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