Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 468 5e-127 >seq2 Length=27840087 Score = 468 bits (518), Expect = 5e-127 Identities = 1233/1861 (66%), Gaps = 32/1861 (2%) Strand=Plus/Minus Query 36793 ACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTT 36852 || ||||||| ||||| ||| | || | |||||| | | ||||||||| || || || Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246 Query 36853 AGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCT 36912 || ||| | ||||| |||||||| || || | |||| | || | || | | || Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186 Query 36913 ATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970 | || |||||| | || ||||||||||| |||||||| ||||| || || ||||||| Sbjct 27785185 ACATGAATATTGAAA--GACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTT 27785128 Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030 || | | |||| || || ||||| || |||||||| | | || | | | Sbjct 27785127 TTATAGTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 27785068 Query 37031 GTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCAT 37087 | | | || | || ||| || |||||| | | | | ||| ||| || || || | Sbjct 27785067 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 27785008 Query 37088 TATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 || ||||| || | | || ||| || | | || ||| | || || |||||||| Sbjct 27785007 CATCCCACAAAT--CAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAA 27784950 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| || |||| |||||| || || || |||||| || || | |||||||| Sbjct 27784949 TTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATT 27784890 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | |||||||| | || ||||| |||||||| || || || || | |||||| Sbjct 27784889 ATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCT 27784830 Query 37266 CAATCCATGTG----TATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | || ||| ||| ||| |||| || ||||||||||||| | |||||||| Sbjct 27784829 GACACCGTGTTGCGCTATAGATT----TTTTAAGAGCATTCCAATCCCAAAGATCTGTTG 27784774 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | ||| |||||||||||| || | ||| ||||| || ||||| | ||| | Sbjct 27784773 GTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAG 27784714 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||||| ||||| | | | ||||| ||| || || | ||| | || |||| |||| Sbjct 27784713 TCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATA 27784654 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||||||||| || |||||||| |||||| || ||| | | ||| | || Sbjct 27784653 TAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCA 27784594 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 |||||| || | || || || || || || || ||||| || || | || || Sbjct 27784593 TTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAAT 27784534 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | ||| | | |||| || || || ||||| ||||| ||||||||||||| |||| Sbjct 27784533 TTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTT 27784474 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAA 37678 | | ||||| || | | | | | ||| | || ||||| || | | | | Sbjct 27784473 TCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCA 27784414 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | | | ||||| | | |||||| ||||| | ||||||| || | || Sbjct 27784413 CAAACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTG-GTGCCGAA 27784355 Query 37739 -ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| | || ||||| || |||||||| || | || ||||| | ||| ||| ||| Sbjct 27784354 TATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTG 27784295 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | |||||||| || ||| ||| || || || || || |||| ||||| Sbjct 27784294 CTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGAT 27784235 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGA-TCGCTTTAAtttttttCTTTGT 37916 || || || | ||| | | | || |||| | ||| || | | || | Sbjct 27784234 TCAATGATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCC-CTCTCG 27784176 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||| |||| ||||| | || | |||||| | ||||| ||||| | || || || Sbjct 27784175 TTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCA 27784116 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 || ||||||||||| ||||| ||||||| ||| || |||| |||||| | ||| Sbjct 27784115 TTTATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 27784056 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 ||||| ||| |||||| ||| | ||| | | || || || || || ||| || Sbjct 27784055 AGGTATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTT 27783996 Query 38097 TCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 | ||||| | ||||| |||| | ||| | |||||| || || | ||| || | | || Sbjct 27783995 T-TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATG 27783937 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 |||| ||||||||| |||| ||||||| || ||| | | |||||| ||| ||||| Sbjct 27783936 CTCCAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTA 27783877 Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275 |||| ||||||| ||||| || ||||||| | || | || | || || ||||||| Sbjct 27783876 ACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTC 27783817 Query 38276 GTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 | ||| | | | | || ||| || |||||||| |||||||| | ||||||||| Sbjct 27783816 GAATAC-AGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGT 27783758 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 | | | | ||| || ||||| || ||| | ||| | || | |||||| | Sbjct 27783757 TCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAA 27783698 Query 38395 GACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||| ||| || | || || | || ||| | || || |||||||| | || | Sbjct 27783697 GACAATTGTGGACGATTT-GTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAA 27783639 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 || || | |||| || ||||| | | || ||| ||||| |||| || ||||| Sbjct 27783638 ACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACC 27783579 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 || | || | |||||||| ||| |||||||||||| |||||| ||| ||| || Sbjct 27783578 TATGGCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAG 27783519 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||| || | ||| || | |||||| || ||||| |||| | ||| || Sbjct 27783518 CAAATACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATA 27783459 Query 38634 T 38634 | Sbjct 27783458 T 27783458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506187852320