Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 468 5e-127
>seq2
Length=27840087
Score = 468 bits (518), Expect = 5e-127
Identities = 1233/1861 (66%), Gaps = 32/1861 (2%)
Strand=Plus/Minus
Query 36793 ACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTT 36852
|| ||||||| ||||| ||| | || | |||||| | | ||||||||| || || ||
Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246
Query 36853 AGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCT 36912
|| ||| | ||||| |||||||| || || | |||| | || | || | | ||
Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186
Query 36913 ATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970
| || |||||| | || ||||||||||| |||||||| ||||| || || |||||||
Sbjct 27785185 ACATGAATATTGAAA--GACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTT 27785128
Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030
|| | | |||| || || ||||| || |||||||| | | || | | |
Sbjct 27785127 TTATAGTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 27785068
Query 37031 GTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCAT 37087
| | | || | || ||| || |||||| | | | | ||| ||| || || || |
Sbjct 27785067 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 27785008
Query 37088 TATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145
|| ||||| || | | || ||| || | | || ||| | || || ||||||||
Sbjct 27785007 CATCCCACAAAT--CAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAA 27784950
Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205
|| ||||| || |||| |||||| || || || |||||| || || | ||||||||
Sbjct 27784949 TTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATT 27784890
Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265
||| | |||||||| | || ||||| |||||||| || || || || | ||||||
Sbjct 27784889 ATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCT 27784830
Query 37266 CAATCCATGTG----TATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
| || ||| ||| ||| |||| || ||||||||||||| | ||||||||
Sbjct 27784829 GACACCGTGTTGCGCTATAGATT----TTTTAAGAGCATTCCAATCCCAAAGATCTGTTG 27784774
Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
| ||| |||||||||||| || | ||| ||||| || ||||| | ||| |
Sbjct 27784773 GTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAG 27784714
Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441
||||||| ||||| | | | ||||| ||| || || | ||| | || |||| ||||
Sbjct 27784713 TCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATA 27784654
Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501
| ||||||||||| || |||||||| |||||| || ||| | | ||| | ||
Sbjct 27784653 TAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCA 27784594
Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561
|||||| || | || || || || || || || ||||| || || | || ||
Sbjct 27784593 TTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAAT 27784534
Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621
| ||| | | |||| || || || ||||| ||||| ||||||||||||| ||||
Sbjct 27784533 TTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTT 27784474
Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAA 37678
| | ||||| || | | | | | ||| | || ||||| || | | | |
Sbjct 27784473 TCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCA 27784414
Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738
|||| || | | | ||||| | | |||||| ||||| | ||||||| || | ||
Sbjct 27784413 CAAACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTG-GTGCCGAA 27784355
Query 37739 -ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797
||| | || ||||| || |||||||| || | || ||||| | ||| ||| |||
Sbjct 27784354 TATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTG 27784295
Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857
|||| | |||||||| || ||| ||| || || || || || |||| |||||
Sbjct 27784294 CTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGAT 27784235
Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGA-TCGCTTTAAtttttttCTTTGT 37916
|| || || | ||| | | | || |||| | ||| || | | || |
Sbjct 27784234 TCAATGATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCC-CTCTCG 27784176
Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976
||| |||| ||||| | || | |||||| | ||||| ||||| | || || ||
Sbjct 27784175 TTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCA 27784116
Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036
|| ||||||||||| ||||| ||||||| ||| || |||| |||||| | |||
Sbjct 27784115 TTTATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 27784056
Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096
||||| ||| |||||| ||| | ||| | | || || || || || ||| ||
Sbjct 27784055 AGGTATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTT 27783996
Query 38097 TCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155
| ||||| | ||||| |||| | ||| | |||||| || || | ||| || | | ||
Sbjct 27783995 T-TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATG 27783937
Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215
|||| ||||||||| |||| ||||||| || ||| | | |||||| ||| |||||
Sbjct 27783936 CTCCAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTA 27783877
Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275
|||| ||||||| ||||| || ||||||| | || | || | || || |||||||
Sbjct 27783876 ACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTC 27783817
Query 38276 GTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334
| ||| | | | | || ||| || |||||||| |||||||| | |||||||||
Sbjct 27783816 GAATAC-AGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGT 27783758
Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
| | | | ||| || ||||| || ||| | ||| | || | |||||| |
Sbjct 27783757 TCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAA 27783698
Query 38395 GACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453
|||| ||| || | || || | || ||| | || || |||||||| | || |
Sbjct 27783697 GACAATTGTGGACGATTT-GTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAA 27783639
Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513
|| || | |||| || ||||| | | || ||| ||||| |||| || |||||
Sbjct 27783638 ACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACC 27783579
Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573
|| | || | |||||||| ||| |||||||||||| |||||| ||| ||| ||
Sbjct 27783578 TATGGCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAG 27783519
Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633
| |||||| || | ||| || | |||||| || ||||| |||| | ||| ||
Sbjct 27783518 CAAATACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATA 27783459
Query 38634 T 38634
|
Sbjct 27783458 T 27783458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468506187852320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |