Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2 563 1e-155
seq4 235 7e-57
>seq2
Length=27840087
Score = 563 bits (624), Expect = 1e-155
Identities = 1255/1868 (67%), Gaps = 24/1868 (1%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| ||||| |||||||| || ||||| ||| |||| | || || |||| |
Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| ||||| | ||| ||||||||||| || || ||||| || || || |||||||||||
Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 65077
| | || || ||||||||| | ||||||||| || || | ||| |||| ||||
Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064
Query 65078 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134
| || |||| || || || |||| | || || || ||| || ||||| ||||
Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004
Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194
||| || | || |||||| | | || | || | || ||||| |||||||| ||
Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944
Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254
|||||| |||| | |||||||| || ||||| || || | ||||||||||| ||
Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884
Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314
||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | |||
Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824
Query 65315 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372
|| ||| | | | || ||||| ||| | ||||| ||||||||| | |||
Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766
Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 65431
|| | ||| || || || | | || || ||||| || || ||
Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707
Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491
|||||| || ||| ||||| |||||| || || || || || || || || || |||||
Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647
Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 65551
||| |||| || ||||| |||||| | || || | | ||| | | ||
Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587
Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611
|| ||||| || || ||||| || |||||||| ||||| | || | ||| || |
Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527
Query 65612 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 65671
|| ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | ||
Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467
Query 65672 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACAT 65728
| ||| || || || || || ||| ||| | | ||| | | ||||||||
Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 27784407
Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788
|| | ||| | ||| |||| |||||| || |||| |||| | ||| ||||| |
Sbjct 27784406 ATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 27784347
Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848
||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| |
Sbjct 27784346 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 27784287
Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908
|||||| | |||||| | | ||| | ||||||||||| || | |||||||| || ||
Sbjct 27784286 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227
Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCGTA 65965
|| ||| | | ||||||| || | | |||| | ||| | |||| ||| ||
Sbjct 27784226 GGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCATA 27784170
Query 65966 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 66025
| |||| | ||| || || || |||||||||| | ||||| |||| ||
Sbjct 27784169 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 27784110
Query 66026 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 66085
|||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| ||
Sbjct 27784109 TGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 27784050
Query 66086 CCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145
||| | || | ||| | ||| | | | ||| ||||| ||||| ||||| ||||||||
Sbjct 27784049 CCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAG 27783990
Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205
|| | || | | | ||| | ||||| || ||||| ||||| || | |||||||
Sbjct 27783989 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGG 27783930
Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265
| ||| || |||||||| | || | ||| |||||| | ||||| ||||||||
Sbjct 27783929 TCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGG 27783870
Query 66266 -AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT 66324
| |||| ||||| || || || || || || | || || | || | || ||||||
Sbjct 27783869 TACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATAC 27783811
Query 66325 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 66384
|| || || || || |||||| || || || | ||||||| ||| | |
Sbjct 27783810 AGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTG 27783751
Query 66385 TATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATT 66443
| | | || || || || |||| || || ||||| |||||||| ||||| |
Sbjct 27783750 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAAT 27783692
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
|| ||||| | || | ||| ||| | || || || || || ||||| | |||
Sbjct 27783691 TGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCA 27783632
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563
|| || | |||||| || |||| || || || ||||| ||| || |||| |||
Sbjct 27783631 GATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCG 27783572
Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 66623
|||||||||| || ||||| |||||||| | || || |||||||| | ||| ||
Sbjct 27783571 ACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATAC 27783512
Query 66624 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 66683
|| || | || || || ||||| ||||| ||| || || || || || ||||||
Sbjct 27783511 GACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATA 27783452
Query 66684 ACCGAGTT 66691
| |||||
Sbjct 27783451 GCAGAGTT 27783444
>seq4
Length=23952536
Score = 235 bits (260), Expect = 7e-57
Identities = 592/890 (67%), Gaps = 16/890 (2%)
Strand=Plus/Plus
Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867
|||| ||||| |||| || | ||| ||||||| || || | || |||||
Sbjct 3358103 TTTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATAC 3358162
Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927
||| ||||| || || ||| ||||| || ||||| || || || | || || | |
Sbjct 3358163 GTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCT 3358222
Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987
|||| || ||||||||| | ||| || ||||| || || | ||| | ||
Sbjct 3358223 CCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACA 3358282
Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047
| ||| || |||||||| ||||| ||||| | |||||||||| || || | ||
Sbjct 3358283 GACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATT 3358342
Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107
| || || ||||| | || ||||| ||||| ||||| | || || || | || |
Sbjct 3358343 TGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGAT----G 3358398
Query 36108 ATATTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACATCAA-ACATGC 36162
|| | | || | | |||| | || | | || ||||| ||||||| ||| ||
Sbjct 3358399 ATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GC 3358457
Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222
|| || || || | |||||||| | || || || ||||| || || || |||||
Sbjct 3358458 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGG 3358517
Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282
||| || ||||| || || |||||||| || || ||||| ||| |||||| |||||
Sbjct 3358518 CATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCC 3358577
Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACTGTC-ATGTA-TCCA 36339
|| || || || || ||||| | |||||| ||| | || | | || ||| | ||||
Sbjct 3358578 CTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCA 3358637
Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
| |||||||||||||| || ||| |||||||| || || ||||| || ||
Sbjct 3358638 AGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAG 3358697
Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459
||| | ||| | ||| ||| ||||||||| |||| | || ||||| |||||
Sbjct 3358698 ATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGA 3358757
Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519
|| | || || ||||| |||||||| || |||||||| | ||| ||||| || || ||
Sbjct 3358758 GTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCAC 3358817
Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579
|| | || || || | | ||| ||||| || || || || ||| ||||| ||
Sbjct 3358818 CTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAA 3358877
Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639
|| | ||||| ||||| | ||||| |||| ||| || | |
Sbjct 3358878 GGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAA 3358937
Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
|||||||| | |||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 3358938 GTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658146654085520
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