Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 >seq2 Length=27840087 Score = 123 bits (136), Expect = 2e-23 Identities = 285/427 (67%), Gaps = 18/427 (4%) Strand=Plus/Plus Query 20921 CAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTC 20980 ||||||||||| || || ||||| || ||||| || || |||| || || ||||| || Sbjct 14040411 CAGCAGGGGATTCACATGATTGTTATAGACGTGAGCATCGCCCAGTGTATGGACAAAATC 14040470 Query 20981 TCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGAT 21040 || || | | |||||| || || ||||||| || |||| | ||| || |||||| Sbjct 14040471 GCCGGGTTTTAAGCCCGTCACATGGGCGATCATGTAGGTCAACAAGGCATACGAGGCGAT 14040530 Query 21041 GTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 ||| || || || || || |||||||||||| | ||| ||||| |||||||||| || Sbjct 14040531 GTTGAAAGGCACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTC 14040590 Query 21101 CCCCCGAGCC------ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 || || | | || || ||||| || ||| || || || | ||||| | Sbjct 14040591 ACCACGCGACTGCGATACATAGAACTGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTG 14040650 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTT 21214 | | |||| || ||||| ||| |||| | |||||| ||||| | | | |||| Sbjct 14040651 GGGTATGTCCAAAGGATTCCAGGCGGACATTATGATGCGACGATC---CGCCGGATTGTT 14040707 Query 21215 ---AATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTC 21271 || ||| | || | |||||| || | ||||| || ||||| |||| Sbjct 14040708 GCGTATAGTATCGATGACCTGTTTCAGCTGATCAATACCCTGGCCGGTGTAGT---CGTC 14040764 Query 21272 GGCCC---CCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAG 21328 || | | || | || ||||| || | ||||||||| || || ||||| ||||| Sbjct 14040765 GGTGCATTTACCATATTTTGCGCCAAAGTGACGCCACTGGAAGCCATATACCGGACCCAG 14040824 Query 21329 ATCGCCC 21335 ||| ||| Sbjct 14040825 ATCACCC 14040831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427759431433440