Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq4 100 3e-16 seq3 93.3 4e-14 >seq2 Length=27840087 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || |||||||| || ||| Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | || || ||||| || || || |||||||||| |||||||| || | Sbjct 185538 CAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || |||||||| ||| || || | | || | ||||| | |||||| | Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||||| | ||||| ||||| |||||||| Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371 Score = 107 bits (118), Expect = 2e-18 Identities = 353/541 (65%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 153270 TTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATAC 153329 ||||||| ||| || ||||| || |||| ||| || || || || | || ||| Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATAT 27784706 Query 153330 GGCTCA-CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTC 153388 || || || || || || | || | ||||| || | || ||| || | |||||| Sbjct 27784705 GGTCCATCTCTCTGA-GCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647 Query 153389 GGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGC-GCAACATGA 153447 | ||||||| | || | ||||| || || || |||| || || | ||| | | Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGAATACCGCATTAATA 27784588 Query 153448 CAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtt 153507 ||||| || || || ||||| | ||||| || || ||||| || || | ||| |||| Sbjct 27784587 TTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATT 27784528 Query 153508 tttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGA 153567 |||| || || | ||| ||| |||| || || ||||||||||| | || | Sbjct 27784527 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAA 27784468 Query 153568 CATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACG--TTC-CATTAATGATATATT 153624 | ||| || | | | || ||| ||| | | ||| | | | | | | Sbjct 27784467 CGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACA 27784408 Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 | || | || || |||||||| || || || || |||| || || || |||||| | Sbjct 27784407 TATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAA 27784348 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 ||||||| | |||| ||| ||||||||||| || ||| ||| |||||||| | Sbjct 27784347 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 27784288 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 |||||||| |||||| ||| |||||| || || || || || ||||| ||| || | Sbjct 27784287 TGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGA 27784228 Query 153805 T 153805 | Sbjct 27784227 T 27784227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||||||||| ||||| || ||| | |||| ||||| Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || |||||| |||| ||||| |||||||| ||||| || ||||||||||| | Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | || || | || || ||||||| || | ||||| Sbjct 14207584 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14207643 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || || || ||||| Sbjct 14207644 CCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 >seq4 Length=23952536 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 52848 CATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGAC 52907 |||||| |||||||| | || || ||| | ||||| |||| | |||||||| | Sbjct 3358380 CATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGCATGAATTGTGC 3358321 Query 52908 CATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGT-CAGC 52966 |||||| |||||| || || ||||||||||| | |||||| || | |||||| | Sbjct 3358320 ATTGATGTCCGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGG 3358261 Query 52967 CGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCA 53026 | |||| ||| ||| || || || || | |||||| | | || ||||| || |||| Sbjct 3358260 CAAAAT-CTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCA 3358202 Query 53027 AAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 | || ||||| ||||||| | || ||||| || Sbjct 3358201 AGACTAACTTCTTCGAGAAAAAAGTTGGCGAATA 3358168 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || || |||| |||||||| ||||||||||| |||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || || || || || |||||||||| |||||||| || || Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 139658 ATGCCTTCTTTGTC 139671 || ||||| ||||| Sbjct 1975339 ATACCTTCCTTGTC 1975326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044293857600