Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 590 9e-164 seq4 255 8e-63 >seq2 Length=27840087 Score = 590 bits (654), Expect = 9e-164 Identities = 1268/1874 (68%), Gaps = 36/1874 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || ||||| || ||||| || ||||| ||| |||| | || || |||| | Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 78956 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064 Query 78957 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | || |||| || || || |||| | || || || ||| || ||||| |||| Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| || | || |||||| | | || | || | || ||||| |||||||| || Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 |||||| |||| | |||||||| || ||||| || || | ||| |||||||| || Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 ||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824 Query 79194 GTAT---GATCT-GATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA 79249 || | | | | |||||| || |||| | ||||||||||||||| | || Sbjct 27784823 GTGTTGCGCTATAGATTTT----TTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATT 27784768 Query 79250 CATTCCAAAGATCATATTGTAGAATACCGTTACTAGC--GTATGATCCTGTGTATGTTTC 79307 ||||| | |||||| || | ||| || || || | | || || || || || Sbjct 27784767 TTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG--CCAACATAAGTCTC 27784710 Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 ||| ||||| || | | ||||||||||| || || || || ||||| || || || || Sbjct 27784709 ATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGT 27784650 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 ||||||||||| || ||| | |||||| | || || | | ||| | | Sbjct 27784649 TTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAA 27784590 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 || || ||||| || || ||||| || |||||||| ||||| | || | ||| || Sbjct 27784589 TATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGA 27784530 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---CCT 79544 ||| ||||||||| | ||| || ||||| ||||| || |||||||| | || | | Sbjct 27784529 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGT 27784470 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA--TTAC 79601 || ||| || || || || || || ||| ||| || | | || | || Sbjct 27784469 AACGATT---TTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCAC 27784413 Query 79602 AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 79661 |||||| || | |||| ||| |||| |||||| || |||| |||| | ||| ||| Sbjct 27784412 AAACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATA 27784353 Query 79662 TTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACT 79721 || | |||||| ||||| || ||||| || || || ||||| | ||||||||| || || Sbjct 27784352 TTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCT 27784293 Query 79722 CTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTC 79781 ||| ||||||| | |||||| | | ||| | ||||||||||| || | |||||||| Sbjct 27784292 TTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTC 27784233 Query 79782 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGACTTGTATCTCTTTTCTCT-- 79838 || || || ||| | | ||||||| || | | || | | ||| | |||| Sbjct 27784232 AATGATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCG 27784176 Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 ||| |||| |||| | ||| || || || ||||||||||| | ||||| || Sbjct 27784175 TTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCA 27784116 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 || | |||||||| || ||||| ||| ||| | | | || ||||||||||| ||||| Sbjct 27784115 TTTATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 27784056 Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 ||| ||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| || Sbjct 27784055 AGGTATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTT 27783996 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 |||||| || | || | | | ||| || ||||| || ||||| ||||| || | | Sbjct 27783995 TTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGC 27783936 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 ||| |||| ||| || |||||||| | || | ||| |||||| | ||||| || Sbjct 27783935 TCCAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAA 27783876 Query 80139 CATTGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||||| | |||| ||||| || || || || || || | || || | || | || | Sbjct 27783875 CATTGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTC 27783817 Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 ||||| || || || || || |||||| || || || | ||||||| ||| Sbjct 27783816 GAATACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTT 27783757 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCA-TCAATCATGTTAAGTAGAAAACAGCTA 80316 | | | | | || || || || |||| || | ||||| |||||||| | Sbjct 27783756 CAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAA 27783698 Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 |||| ||| ||||| | || | ||| ||| | || || || || || ||||| | Sbjct 27783697 GACAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAA 27783638 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCT 80436 ||||| || | |||||| || |||| || || || ||||| ||| || ||| Sbjct 27783637 CGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCT 27783578 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 | ||||||||||||| || ||||| |||||||| | || || ||||||||| | | Sbjct 27783577 ATGGCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGC 27783518 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 || || || || | || || || ||||| ||||| ||| || || || || || Sbjct 27783517 AAATACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATAT 27783458 Query 80557 ATAATAACCGAGTT 80570 |||||| | ||||| Sbjct 27783457 ATAATAGCAGAGTT 27783444 >seq4 Length=23952536 Score = 255 bits (282), Expect = 8e-63 Identities = 566/840 (67%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 || ||||| ||| ||||| || || ||| ||||| || ||||| || || |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || | ||||| || || ||||| | ||| || ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | || | |||||| |||||||| ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | ||| || || ||||| | || ||||| ||||| ||||||| || ||||| Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCAC---TCGGTGGATGCAATAAATGTTTAAACAT 49955 | || ||||| | | | | |||| | || | |||| ||||| ||||| Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 49956 CAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 || ||| || || || || |||| |||||||| | || | || ||||| || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC- 50132 |||||||||| || || || || || |||| | |||||| ||| | | || || || Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627 Query 50133 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||| | |||| | |||||||||||||| || ||| ||||| ||||| |||| Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 |||| || ||||| | ||| | ||| ||| ||| |||||||||| | || | Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| ||||| || | || || ||||| || ||||| || |||||||| | ||| |||| Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | || ||||| || | || || || | | ||| ||||| || || || || || Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | ||||| || || | ||||| ||||| || ||||| |||| || Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCC 3358927 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | | |||||||| | ||| || |||||||| ||||| ||||| ||||| |||| Sbjct 3358928 AGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240266771920