Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 >seq4 Length=23952536 Score = 150 bits (166), Expect = 2e-31 Identities = 569/880 (65%), Gaps = 22/880 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || ||||| |||| | || ||| ||||| || || || | |||||||| | Sbjct 3358105 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3358164 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | |||| |||| || ||||||||||| || || ||||| || || | ||| Sbjct 3358165 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3358224 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| |||||||| | | | | | ||| || ||| ||||| | | | Sbjct 3358225 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3358284 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| |||| ||| |||||||| | ||||| || |||||||||| || || | ||| Sbjct 3358285 CGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTTG 3358344 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA-ATAAT 13822 || || | || || | ||| |||| || || | ||||| || | | || || Sbjct 3358345 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC----AGAGATGAT 3358400 Query 13823 TGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAA 13878 ||| || |||| |||| | | | ||| || || | ||| |||| Sbjct 3358401 CTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAA 3358459 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| | |||||| || | || | || || || || || | || |||| Sbjct 3358460 AGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCA 3358519 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| || ||||| || | |||||| || | ||||| || |||||| ||||||| Sbjct 3358520 TCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCT 3358579 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTTGTTCGATATCC 14055 | || ||||| ||||| || | || || ||||| || || || | | || |||| Sbjct 3358580 CCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGC--CTTCGAT-GAAATCC 3358636 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 | ||||| || | ||| || | | |||||||||||| ||||| || | Sbjct 3358637 AAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA 3358696 Query 14116 AATATTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 ||| ||| ||| || | | | | | ||| |||||||| || || | ||| ||||| | Sbjct 3358697 GATAATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCT 3358753 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232 | ||||| | || ||||| || || ||||| ||||| || || | |||||| | || Sbjct 3358754 CCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTT 3358813 Query 14233 GTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 | || ||| | || | ||| | | ||| |||||||| || ||||| || |||| Sbjct 3358814 GCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAA 3358873 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14352 | || || | | | ||||||| |||| | || | | | ||| |||| Sbjct 3358874 AGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGG 3358933 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || || ||||| ||||| || || || || ||||| || Sbjct 3358934 TCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479708942805200