Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq4 150 2e-31
>seq4
Length=23952536
Score = 150 bits (166), Expect = 2e-31
Identities = 569/880 (65%), Gaps = 22/880 (3%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| ||||| |||| | || ||| ||||| || || || | |||||||| |
Sbjct 3358105 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3358164
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||| | |||| |||| || ||||||||||| || || ||||| || || | |||
Sbjct 3358165 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3358224
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703
||||| |||||||| | | | | | ||| || ||| ||||| | | |
Sbjct 3358225 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3358284
Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763
| ||| |||| ||| |||||||| | ||||| || |||||||||| || || | |||
Sbjct 3358285 CGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTTG 3358344
Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA-ATAAT 13822
|| || | || || | ||| |||| || || | ||||| || | | || ||
Sbjct 3358345 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC----AGAGATGAT 3358400
Query 13823 TGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAA 13878
||| || |||| |||| | | | ||| || || | ||| ||||
Sbjct 3358401 CTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAA 3358459
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
| |||||||| | |||||| || | || | || || || || || | || ||||
Sbjct 3358460 AGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCA 3358519
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
||| || ||||| || | |||||| || | ||||| || |||||| |||||||
Sbjct 3358520 TCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCT 3358579
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTTGTTCGATATCC 14055
| || ||||| ||||| || | || || ||||| || || || | | || ||||
Sbjct 3358580 CCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGC--CTTCGAT-GAAATCC 3358636
Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115
| ||||| || | ||| || | | |||||||||||| ||||| || |
Sbjct 3358637 AAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA 3358696
Query 14116 AATATTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172
||| ||| ||| || | | | | | ||| |||||||| || || | ||| ||||| |
Sbjct 3358697 GATAATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCT 3358753
Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232
| ||||| | || ||||| || || ||||| ||||| || || | |||||| | ||
Sbjct 3358754 CCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTT 3358813
Query 14233 GTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292
| || ||| | || | ||| | | ||| |||||||| || ||||| || ||||
Sbjct 3358814 GCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAA 3358873
Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14352
| || || | | | ||||||| |||| | || | | | ||| ||||
Sbjct 3358874 AGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGG 3358933
Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
|| || ||||| ||||| || || || || ||||| ||
Sbjct 3358934 TCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479708942805200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |