Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq4 161 9e-35
>seq4
Length=23952536
Score = 161 bits (178), Expect = 9e-35
Identities = 570/878 (65%), Gaps = 18/878 (2%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371
|| ||||| |||| | || ||| ||||| || || || | |||||||| |
Sbjct 3358105 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3358164
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
|||||||| | |||| |||| || || |||||||| || || ||||| || || | |||
Sbjct 3358165 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3358224
Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491
||||| ||||||||| | | | | | ||| || ||| ||||| | || |
Sbjct 3358225 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3358284
Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551
| ||| |||| ||| |||||||| | ||||| || |||||||||| || || | |||
Sbjct 3358285 CGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTTG 3358344
Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA-ATAAT 13610
|| || | || || | ||| |||| || || | ||||| || | | || ||
Sbjct 3358345 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC----AGAGATGAT 3358400
Query 13611 CTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAA 13666
|| ||| ||| ||| |||| | | | ||| || || | ||| ||||
Sbjct 3358401 CTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCAT-CACAGCAA 3358459
Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726
| |||||||| | |||||| || | || | || || || || || | || ||||
Sbjct 3358460 AGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCA 3358519
Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786
||| || ||||| || | |||||| || | || || || |||||| |||||||
Sbjct 3358520 TCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCT 3358579
Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846
| || ||||| ||||| || | || || ||||| || || ||| |||||
Sbjct 3358580 CCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAG 3358639
Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906
||||| || | ||| || | | ||||||||| || |||||||| | ||
Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699
Query 13907 GTTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963
||| ||| || | | | | | ||| |||||||| || || | ||| ||||| || |
Sbjct 3358700 AATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCG 3358756
Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023
|||| | || || || || || ||||| ||||| ||||| | |||||| | ||| |
Sbjct 3358757 AGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCA 3358816
Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACAATACCATCACTAGCTGCAAAA 14082
||||| | || | || | |||| || ||||||||||| ||||| || |||||
Sbjct 3358817 CCTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3358875
Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142
|| || | | | ||||||| |||| | || | | | ||| ||||
Sbjct 3358876 AAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTC 3358935
Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
|| || ||||| ||||| || || || || ||||| ||
Sbjct 3358936 AAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478569788059920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |