Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 161 9e-35 >seq4 Length=23952536 Score = 161 bits (178), Expect = 9e-35 Identities = 570/878 (65%), Gaps = 18/878 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || ||||| |||| | || ||| ||||| || || || | |||||||| | Sbjct 3358105 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3358164 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | |||| |||| || || |||||||| || || ||||| || || | ||| Sbjct 3358165 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3358224 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 ||||| ||||||||| | | | | | ||| || ||| ||||| | || | Sbjct 3358225 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3358284 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | ||| |||| ||| |||||||| | ||||| || |||||||||| || || | ||| Sbjct 3358285 CGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTTG 3358344 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA-ATAAT 13610 || || | || || | ||| |||| || || | ||||| || | | || || Sbjct 3358345 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC----AGAGATGAT 3358400 Query 13611 CTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAA 13666 || ||| ||| ||| |||| | | | ||| || || | ||| |||| Sbjct 3358401 CTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCAT-CACAGCAA 3358459 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 | |||||||| | |||||| || | || | || || || || || | || |||| Sbjct 3358460 AGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCA 3358519 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 ||| || ||||| || | |||||| || | || || || |||||| ||||||| Sbjct 3358520 TCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCT 3358579 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 | || ||||| ||||| || | || || ||||| || || ||| ||||| Sbjct 3358580 CCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAG 3358639 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | ||| || | | ||||||||| || |||||||| | || Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699 Query 13907 GTTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 ||| ||| || | | | | | ||| |||||||| || || | ||| ||||| || | Sbjct 3358700 AATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCG 3358756 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 |||| | || || || || || ||||| ||||| ||||| | |||||| | ||| | Sbjct 3358757 AGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCA 3358816 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACAATACCATCACTAGCTGCAAAA 14082 ||||| | || | || | |||| || ||||||||||| ||||| || ||||| Sbjct 3358817 CCTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3358875 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 || || | | | ||||||| |||| | || | | | ||| |||| Sbjct 3358876 AAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTC 3358935 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||||| ||||| || || || || ||||| || Sbjct 3358936 AAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAA 3358973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569788059920