Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 547 9e-151
seq4 206 4e-48
>seq2
Length=27840087
Score = 547 bits (606), Expect = 9e-151
Identities = 1232/1841 (67%), Gaps = 22/1841 (1%)
Strand=Plus/Minus
Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886
||| || || ||||| |||||||| || || ||||| ||||| |||||||| ||
Sbjct 27785276 TTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAATGGAT 27785217
Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946
||||| ||| ||| | || || |||| |||||||| | ||||||||||||||
Sbjct 27785216 TGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTTTGATC 27785157
Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006
|| || ||||| || || || ||||||||||| | | || || ||||||||| |
Sbjct 27785156 AATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGATTTGACTGAAATTTCCCACAC 27785097
Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCAC 71062
||||||||| || || | ||| |||| |||| | || |||| || || || ||||
Sbjct 27785096 AGTTTTATACAAATCACG-AATTTCTTTAGGAATAGATTCAATATTTTGTATTGAACCAC 27785038
Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122
| || || || |||||| ||||| |||| ||| || | || |||||| | |
Sbjct 27785037 GACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTAAATCAC 27784978
Query 71123 TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 71182
|| | || | || ||||| |||||||| |||||||| |||| | |||||||| |
Sbjct 27784977 GTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGT 27784918
Query 71183 TACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 71242
| ||||| || || | ||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct 27784917 TTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAG 27784858
Query 71243 GCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA-GA 71301
|||| || || | | || | |||||| | ||| ||| || | || ||||| ||
Sbjct 27784857 GCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTG-CGCTATAGATTTTTTAAGA 27784799
Query 71302 GATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCG 71361
| | ||||| ||||||||| | |||| || ||
Sbjct 27784798 GCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCT 27784739
Query 71362 TTACTAGC--GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419
|| || | | || || |||| || || |||||||| ||| | | |||| |||||
Sbjct 27784738 TTGCTTACTGGACTG--CCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCAC 27784681
Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479
| || || || || |||||||| || || ||||||||||||| || ||| | ||
Sbjct 27784680 AGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATG 27784621
Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539
|||| | || || | | ||| | | || || ||||| || || ||||| || |
Sbjct 27784620 CTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTC 27784561
Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599
||||||| ||||| | ||| | ||| || ||| ||||||||| | ||| || ||||
Sbjct 27784560 CAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAAT 27784501
Query 71600 TAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGA 71659
| ||||| || |||||||| | ||| | | | ||| || || || || ||
Sbjct 27784500 TTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTT 27784441
Query 71660 GAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716
||| ||| | | || | | | ||||||| || | || | ||| |||| |||||
Sbjct 27784440 TAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTAC 27784381
Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776
| || |||| |||| | | | ||||| | ||||| ||||| |||||||| || |
Sbjct 27784380 ACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATT 27784321
Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836
| || ||||| | ||||||||| || || ||| ||||||| | |||||| | | ||
Sbjct 27784320 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGT 27784261
Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896
| ||||||||||| || | |||||||| || || || ||| | | ||||||| |
Sbjct 27784260 AAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGCCTTAA 27784201
Query 71897 TTATATTCTTGTATCTCTTTTCTCT--TTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954
| | || | ||| | |||| ||| |||| |||| | ||| || || ||
Sbjct 27784200 TAAC--TCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTC 27784143
Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014
|||||| ||| | ||||| |||| || |||||||| |||||||| ||| |||
Sbjct 27784142 ACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTTCATT 27784083
Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074
| | | || ||||||||||| |||||||| ||||| | || | ||| ||||| | |
Sbjct 27784082 AGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGCGTGC 27784023
Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134
| ||||||||| ||||| ||||| |||||||| || | || | | | ||| || ||
Sbjct 27784022 ACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTG 27783963
Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194
||| || ||||| ||||| || | |||| || | ||| || |||||||| | ||
Sbjct 27783962 CCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATA 27783903
Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGG 72253
| ||| |||||| | ||||| |||||||| | |||| ||||| || | || || |
Sbjct 27783902 ACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCGTTCG 27783844
Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTG 72313
| || | || || | || | || |||||| | || || || || || ||||
Sbjct 27783843 TTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGCCACCTG 27783784
Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373
|| || || || | ||||||| ||| | | | | | || || || || ||||
Sbjct 27783783 CCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAG 27783724
Query 72374 CCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432
|| || ||||| |||||||| ||||| ||| ||||| | || | ||| |||
Sbjct 27783723 ACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAA 27783665
Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492
| || || || || || ||||| | ||||| || | |||||| || |||| ||
Sbjct 27783664 AGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCA 27783605
Query 72493 GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552
|| || ||||| |||||| |||| ||||||||||||| || |||||| ||||||
Sbjct 27783604 GAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGTGGTCTT 27783545
Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612
|| | || || ||||||||| | ||| || || || | || || || |||||
Sbjct 27783544 TCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAATCCAAAG 27783485
Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653
||||| ||| || || || || || |||||| | || ||
Sbjct 27783484 TAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 27783444
>seq4
Length=23952536
Score = 206 bits (228), Expect = 4e-48
Identities = 555/840 (66%), Gaps = 13/840 (2%)
Strand=Plus/Plus
Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824
|| ||||| ||| ||||| || || ||| ||||| || |||||||| || ||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884
|| || | ||||| || || ||||| | ||| || ||||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944
|| | || | ||| || | ||||| ||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004
|| || | ||| || || ||||| | || ||||| ||||| ||||| | || || ||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 42005 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 42060
| || ||||| | || | | |||| | || | | || ||||| |||||
Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 42061 CAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119
|| ||| || || || || |||| ||||| || | || || || ||||| || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179
| || |||||||| || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACTGTC- 42237
|||||||||| || || || || || ||||| | |||||| ||| | || | | ||
Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627
Query 42238 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296
||| | |||| | |||||||||||||| || ||| ||||| ||||| ||||
Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687
Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356
|||| || ||||| | ||| | ||| ||| |||||||||||||| | || |
Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747
Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416
|||| || || || | || || ||||| || ||||| || |||||||| | || ||||
Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807
Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476
| | || || || | || || || | | ||| || || || || || || ||
Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867
Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536
| ||||| || || | ||||| ||||| | |||| ||||| ||
Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCC 3358927
Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
| || | | |||||||| | ||| || ||||| || ||||| ||||| || || ||||
Sbjct 3358928 AGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671112538995280
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