Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 547 9e-151 seq4 206 4e-48 >seq2 Length=27840087 Score = 547 bits (606), Expect = 9e-151 Identities = 1232/1841 (67%), Gaps = 22/1841 (1%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || || ||||| |||||||| || || ||||| ||||| |||||||| || Sbjct 27785276 TTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAATGGAT 27785217 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 ||||| ||| ||| | || || |||| |||||||| | |||||||||||||| Sbjct 27785216 TGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTTTGATC 27785157 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || || ||||| || || || ||||||||||| | | || || ||||||||| | Sbjct 27785156 AATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGATTTGACTGAAATTTCCCACAC 27785097 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCAC 71062 ||||||||| || || | ||| |||| |||| | || |||| || || || |||| Sbjct 27785096 AGTTTTATACAAATCACG-AATTTCTTTAGGAATAGATTCAATATTTTGTATTGAACCAC 27785038 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122 | || || || |||||| ||||| |||| ||| || | || |||||| | | Sbjct 27785037 GACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTAAATCAC 27784978 Query 71123 TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 71182 || | || | || ||||| |||||||| |||||||| |||| | |||||||| | Sbjct 27784977 GTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGT 27784918 Query 71183 TACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 71242 | ||||| || || | ||||||||||| ||||| ||||| ||||| ||||| || | Sbjct 27784917 TTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAG 27784858 Query 71243 GCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA-GA 71301 |||| || || | | || | |||||| | ||| ||| || | || ||||| || Sbjct 27784857 GCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTG-CGCTATAGATTTTTTAAGA 27784799 Query 71302 GATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCG 71361 | | ||||| ||||||||| | |||| || || Sbjct 27784798 GCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCT 27784739 Query 71362 TTACTAGC--GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419 || || | | || || |||| || || |||||||| ||| | | |||| ||||| Sbjct 27784738 TTGCTTACTGGACTG--CCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCAC 27784681 Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479 | || || || || |||||||| || || ||||||||||||| || ||| | || Sbjct 27784680 AGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATG 27784621 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539 |||| | || || | | ||| | | || || ||||| || || ||||| || | Sbjct 27784620 CTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTC 27784561 Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599 ||||||| ||||| | ||| | ||| || ||| ||||||||| | ||| || |||| Sbjct 27784560 CAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAAT 27784501 Query 71600 TAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 | ||||| || |||||||| | ||| | | | ||| || || || || || Sbjct 27784500 TTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTT 27784441 Query 71660 GAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| ||| | | || | | | ||||||| || | || | ||| |||| ||||| Sbjct 27784440 TAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTAC 27784381 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | || |||| |||| | | | ||||| | ||||| ||||| |||||||| || | Sbjct 27784380 ACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATT 27784321 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 | || ||||| | ||||||||| || || ||| ||||||| | |||||| | | || Sbjct 27784320 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGT 27784261 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | ||||||||||| || | |||||||| || || || ||| | | ||||||| | Sbjct 27784260 AAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGCCTTAA 27784201 Query 71897 TTATATTCTTGTATCTCTTTTCTCT--TTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 | | || | ||| | |||| ||| |||| |||| | ||| || || || Sbjct 27784200 TAAC--TCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTC 27784143 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| ||| | ||||| |||| || |||||||| |||||||| ||| ||| Sbjct 27784142 ACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTTCATT 27784083 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | | | || ||||||||||| |||||||| ||||| | || | ||| ||||| | | Sbjct 27784082 AGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGCGTGC 27784023 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | ||||||||| ||||| ||||| |||||||| || | || | | | ||| || || Sbjct 27784022 ACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTG 27783963 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| || ||||| ||||| || | |||| || | ||| || |||||||| | || Sbjct 27783962 CCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATA 27783903 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGG 72253 | ||| |||||| | ||||| |||||||| | |||| ||||| || | || || | Sbjct 27783902 ACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCGTTCG 27783844 Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTG 72313 | || | || || | || | || |||||| | || || || || || |||| Sbjct 27783843 TTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGCCACCTG 27783784 Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 || || || || | ||||||| ||| | | | | | || || || || |||| Sbjct 27783783 CCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAG 27783724 Query 72374 CCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 || || ||||| |||||||| ||||| ||| ||||| | || | ||| ||| Sbjct 27783723 ACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAA 27783665 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492 | || || || || || ||||| | ||||| || | |||||| || |||| || Sbjct 27783664 AGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCA 27783605 Query 72493 GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552 || || ||||| |||||| |||| ||||||||||||| || |||||| |||||| Sbjct 27783604 GAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGTGGTCTT 27783545 Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612 || | || || ||||||||| | ||| || || || | || || || ||||| Sbjct 27783544 TCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAATCCAAAG 27783485 Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||||| ||| || || || || || |||||| | || || Sbjct 27783484 TAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 27783444 >seq4 Length=23952536 Score = 206 bits (228), Expect = 4e-48 Identities = 555/840 (66%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 || ||||| ||| ||||| || || ||| ||||| || |||||||| || |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || | ||||| || || ||||| | ||| || ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || | || | ||| || | ||||| ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | ||| || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 42005 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 42060 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 42061 CAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 || ||| || || || || |||| ||||| || | || || || ||||| || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACTGTC- 42237 |||||||||| || || || || || ||||| | |||||| ||| | || | | || Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627 Query 42238 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||| | |||| | |||||||||||||| || ||| ||||| ||||| |||| Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 |||| || ||||| | ||| | ||| ||| |||||||||||||| | || | Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || || || | || || ||||| || ||||| || |||||||| | || |||| Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 | | || || || | || || || | | ||| || || || || || || || Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536 | ||||| || || | ||||| ||||| | |||| ||||| || Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCC 3358927 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | || | | |||||||| | ||| || ||||| || ||||| ||||| || || |||| Sbjct 3358928 AGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112538995280