Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq3 93.3 4e-14 >seq2 Length=27840087 Score = 134 bits (148), Expect = 1e-26 Identities = 489/756 (65%), Gaps = 21/756 (3%) Strand=Plus/Minus Query 156485 AAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTG 156544 |||| | |||| || || ||||||||||| |||||||| ||||| | | || Sbjct 27784972 AAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTT---- 27784917 Query 156545 TGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGG 156600 |||| | || || || ||||| || ||| | |||||| || || | || || || Sbjct 27784916 TGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGG 27784857 Query 156601 CATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTG 156660 |||| || | || || ||||| | | |||| || |||| | |||| | Sbjct 27784856 CATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGC 27784797 Query 156661 TGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTC 156720 ||| ||||| | || ||| | ||||||| ||| || ||||| ||||||| Sbjct 27784796 ATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTT 27784737 Query 156721 GCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAAC 156779 ||| || || || || | || ||| || || || | || || | ||| | | Sbjct 27784736 GCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGA-GCTAATTCACAGC 27784678 Query 156780 TGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAG 156839 |||| || | || ||| || | |||||| ||| || | ||| |||| || || Sbjct 27784677 TGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTT 27784618 Query 156840 CATCGCTCACGTACGGTATGC-GCAACATAACAAATGCATCGGCCAAACCTTGAATGCCA 156898 || || |||| || || | ||| | | ||||| || || || ||||| | ||| Sbjct 27784617 CACGACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCA 27784559 Query 156899 ATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTG 156958 || || || ||||| || || | ||| |||||||| || | | ||||||| |||| Sbjct 27784558 ATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTT 27784499 Query 156959 CGATCAATAATTTTATTCAAACTATCCACTAC-ATGTTTG--ACCACAGTGTGCAATAGT 157015 |||||| |||||||| || | | | || || || | || | | || | Sbjct 27784498 ATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTT--- 27784442 Query 157016 TGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 157072 | ||| ||| ||| | || | | | | | |||| | || || ||||| | |||| Sbjct 27784441 TTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTA 27784382 Query 157073 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 157132 || || || |||| || || || |||||| |||||||| | |||| ||| |||||| Sbjct 27784381 CACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCAT 27784322 Query 157133 TTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATG 157192 ||||| ||| ||| ||| |||||||| | ||| |||| |||||| |||||||| Sbjct 27784321 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATG 27784262 Query 157193 TACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 || || || || || || ||||| ||| |||||| Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGATG 27784226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||| ||| | |||| ||||| | ||| || ||| Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| |||||||| ||||| || ||||||||||| || || ||| Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 14207595 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || |||| ||||| || |||| ||| | ||||| || || | ||| Sbjct 14207596 ACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 14207655 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 14207656 TTAACAAAGATCTGCAT 14207672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || || || || || |||||||| ||| Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || |||| || | || || || || || || || |||||||||| |||||||| || | Sbjct 185538 CAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || |||||||| || || || | | || | ||||| | ||| || | Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || ||||||| ||||| || ||||| |||||||||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || || || |||||||||| |||||||| || || Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 1975339 ATACCTTCCTTGTC 1975326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506994258852960