Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
seq3 93.3 4e-14
>seq2
Length=27840087
Score = 134 bits (148), Expect = 1e-26
Identities = 489/756 (65%), Gaps = 21/756 (3%)
Strand=Plus/Minus
Query 156485 AAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTG 156544
|||| | |||| || || ||||||||||| |||||||| ||||| | | ||
Sbjct 27784972 AAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTT---- 27784917
Query 156545 TGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGG 156600
|||| | || || || ||||| || ||| | |||||| || || | || || ||
Sbjct 27784916 TGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGG 27784857
Query 156601 CATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTG 156660
|||| || | || || ||||| | | |||| || |||| | |||| |
Sbjct 27784856 CATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGC 27784797
Query 156661 TGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTC 156720
||| ||||| | || ||| | ||||||| ||| || ||||| |||||||
Sbjct 27784796 ATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTT 27784737
Query 156721 GCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAAC 156779
||| || || || || | || ||| || || || | || || | ||| | |
Sbjct 27784736 GCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGA-GCTAATTCACAGC 27784678
Query 156780 TGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAG 156839
|||| || | || ||| || | |||||| ||| || | ||| |||| || ||
Sbjct 27784677 TGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTT 27784618
Query 156840 CATCGCTCACGTACGGTATGC-GCAACATAACAAATGCATCGGCCAAACCTTGAATGCCA 156898
|| || |||| || || | ||| | | ||||| || || || ||||| | |||
Sbjct 27784617 CACGACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCA 27784559
Query 156899 ATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTG 156958
|| || || ||||| || || | ||| |||||||| || | | ||||||| ||||
Sbjct 27784558 ATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTT 27784499
Query 156959 CGATCAATAATTTTATTCAAACTATCCACTAC-ATGTTTG--ACCACAGTGTGCAATAGT 157015
|||||| |||||||| || | | | || || || | || | | || |
Sbjct 27784498 ATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTT--- 27784442
Query 157016 TGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 157072
| ||| ||| ||| | || | | | | | |||| | || || ||||| | ||||
Sbjct 27784441 TTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTA 27784382
Query 157073 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 157132
|| || || |||| || || || |||||| |||||||| | |||| ||| ||||||
Sbjct 27784381 CACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCAT 27784322
Query 157133 TTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATG 157192
||||| ||| ||| ||| |||||||| | ||| |||| |||||| ||||||||
Sbjct 27784321 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATG 27784262
Query 157193 TACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228
|| || || || || || ||||| ||| ||||||
Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGATG 27784226
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || |||||||| |||||||| ||| | |||| ||||| | ||| || |||
Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||| ||||| |||||||| ||||| || ||||||||||| || || |||
Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 14207595
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | || |||| ||||| || |||| ||| | ||||| || || | |||
Sbjct 14207596 ACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 14207655
Query 143168 TTTACGAATATTTGCAT 143184
|| || || || |||||
Sbjct 14207656 TTAACAAAGATCTGCAT 14207672
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | || || || | || || || || || |||||||| |||
Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539
Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
|| |||| || | || || || || || || || |||||||||| |||||||| || |
Sbjct 185538 CAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || || |||||||| || || || | | || | ||||| | ||| || |
Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||||| || ||||||| ||||| || ||||| |||||||||||| |
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| ||||| || || || |||||||||| |||||||| || ||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 143078 ATGCCTTCTTTGTC 143091
|| ||||| |||||
Sbjct 1975339 ATACCTTCCTTGTC 1975326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506994258852960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |