Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 219 6e-52 seq6 161 1e-34 seq2 159 5e-34 >seq4 Length=23952536 Score = 219 bits (242), Expect = 6e-52 Identities = 565/848 (67%), Gaps = 32/848 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| ||||||| || ||||| || |||||||| ||||| || || ||| || ||| | Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||||| ||||| | ||||| | ||||| || || | | |||||||||| Sbjct 3358927 GGG---CACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTG 3358871 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| ||||||||| || || || || |||| ||| || || ||| || ||| || Sbjct 3358870 CCGCCTCCGATGGCATTGTTAATGAGAATCTTGTCGA-GCGCTTCAGCCAGGAGGTGCAA 3358812 Query 125217 ATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 || | || | ||| || || || || || |||||| || ||||| ||||||||||| Sbjct 3358811 ATAACCGAAG-CTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGA 3358753 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTC 125333 |||||| ||||| || | || ||| | ||||| || | || || || Sbjct 3358752 GATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACA--GGAACGGGATTATCTG 3358695 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393 || || || || || || |||| || | |||||| | |||| | | ||| Sbjct 3358694 TTCAATGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGG 3358635 Query 125394 A-TCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 | | || || ||| | || || | ||| ||| | | || ||||| ||||| || Sbjct 3358634 ATTTCAT--CG--AAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGA 3358579 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| ||||||||| || || ||||| | ||||||||||| ||||| || || || || Sbjct 3358578 GGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGAT 3358519 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 |||||| ||||| | || ||||| || || || ||||||||| | || |||||||| Sbjct 3358518 GCCCGGTCTGACCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTT 3358459 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAG 125627 ||| | | |||| || || || ||||| | | ||| ||| Sbjct 3358458 TGCTGTGATGATGTTCCG---GCATTTG--------GTGCAACGTCCTAGCCGTGAGCGC 3358410 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| | || | | ||||| || | || || ||||||||||| || || | || Sbjct 3358409 ATCATTGAGATCATCTCTGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTG 3358350 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || |||| ||||||||||||| || | |||| |||||| || || ||||| || Sbjct 3358349 CCCGTCAAATTGATTGGCATGAATTGTGCATTGATGTCCGAGTATATTGAATTTGTTGCG 3358290 Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807 |||||||| || || | || |||| || ||||| | |||||||| || Sbjct 3358289 GATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACC 3358230 Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 || ||| | || || || || || ||||| ||||| |||||||| || || |||| Sbjct 3358229 TTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTCGAGAAAAAAGTTGGCGAA 3358170 Query 125868 TACAAACG 125875 || |||| Sbjct 3358169 TATCAACG 3358162 >seq6 Length=26536676 Score = 161 bits (178), Expect = 1e-34 Identities = 340/506 (67%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct 12302456 TTGCGGAAGAAGATGACGCCGGCACGTGGACCGCGCAGCGTCTTGTGCGTCGTTGTGGTC 12302515 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| ||||| || || || || | | | || | |||||| || | | Sbjct 12302516 ACGATGTCGGCGTACTCGAATGGCGAGGGGATCTGCTCGGCGGCCACCAAGCCGGCGACG 12302575 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| |||| | | || |||| ||||| || | Sbjct 12302576 TGCGCCATGTCGGCCATCAGATAGGCGCCGACCTCGTCACAGATCTTACGGAAACGGCCG 12302635 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || || | | || | |||||| | |||| || ||||| | | ||| |||| Sbjct 12302636 TAATCGAGCAGGCGTGAATAGCACGAGATGCCAGCGATGATGATCTGAGGGCGGAAT--G 12302693 Query 127342 TTGGCACT--CTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 | || || ||| || || ||| | ||||| | || || |||| |||| |||||||| Sbjct 12302694 TGCGCGCTGCCTCAGCCAGCTTGTCGTAGTCAATCAGGCCCGTCTCCGGATTCACCTTGT 12302753 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATC 127447 |||||||||| ||||| |||| ||||| || || | || ||| ||| | Sbjct 12302754 ACGGCATGCTCTCGAAGAAGATGGATGTGGCCGAGATCTTCTTGCTGGGCGTGAAGAAGC 12302813 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 ||||||||| ||||| || ||||||||||| || ||||| || | | | || || | Sbjct 12302814 CGTGCGTCAAATGGCCGCCATCGGGCAGATCCAGGCCCATAATACGATCATGTGGACGCA 12302873 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | || || || || || | |||||| ||| || || || || || ||| || | Sbjct 12302874 GTACGCCCGTATAGACAGCCAGATTGGCCGGCGATCCGGAATAGGGCTGCACATTGACGC 12302933 Query 127568 CCCATTCGGACTCGTTCAAATTGAAC 127593 |||| ||| ||| | ||||||| Sbjct 12302934 CCCAATCGTTGCTGTTGAGATTGAAC 12302959 >seq2 Length=27840087 Score = 159 bits (176), Expect = 5e-34 Identities = 380/566 (67%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| || || || || ||||||||| | |||| ||| | || |||| | Sbjct 14040831 GGGTGATCTGGGTCCGGTATATGGCTTCCAGTGGCGTCACTTTGGCGCAAAATATGGTAA 14040772 Query 70126 CTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 ||| ||| ||||| | || |||||| ||||||| || | ||| |||| || ||| Sbjct 14040771 ATGCACCGAC-GACTACACCGGCCAGGGTATTGATCAGCTGAA-ACAGGTCATCGATACT 14040714 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 | | |||||| | ||| | | ||| |||||| | | ||||||||| || | Sbjct 14040713 ATACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCCTTTGGACATA 14040654 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA--CGA-T 70297 | ||||||||| | || ||||| ||||| |||| ||||| || ||| | || | Sbjct 14040653 CCCCAAATGGCGTTGCCGCCGTGCCACTGCCTGGCGCAGTTCTATGTATCGCAGTCGCGT 14040594 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || ||||||| ||| | |||||||| | || ||||||||||| || || || || || Sbjct 14040593 GGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTGCCTTTC 14040534 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 ||||| || ||| | ||||||| ||||||| || || | || ||| | ||| | Sbjct 14040533 AACATCGCCTCGTATGCCTTGTTGACCTACATGATCGCCCATGTGACGGGCTTAAAACCC 14040474 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477 ||| || || || || | ||||| |||||||| ||| ||||| | | || | Sbjct 14040473 GGCGATTTTGTCCATACACTGGGCGATGCTCACGTCTATAACAATCATGTGAATCCCCTG 14040414 Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537 || ||| | |||| || || | || || ||||| || | || | ||||| Sbjct 14040413 CTGGAGCAGATGAAACGTGAACCACGTCCCTTCCCCAAACTTGTTTTCAAGAGGCAAGTT 14040354 Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597 |||||||| |||| ||||||||||| ||| |||||| |||| ||| Sbjct 14040353 ACGAATATTGAGGATTTTCGCTACGAAGATTTCGAAATTGTTGGTTACAATCCGTACGGA 14040294 Query 70598 AAGATTCCCATGGTTCTGGCTGTTTA 70623 ||||||| |||| |||| || || Sbjct 14040293 AAGATTCAAATGGAAATGGCCGTATA 14040268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741029761423280