Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq4 131 1e-25
>seq4
Length=23952536
Score = 131 bits (144), Expect = 1e-25
Identities = 532/828 (64%), Gaps = 8/828 (1%)
Strand=Plus/Plus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
||||||||||| |||| |||| || || ||||| || || || || | ||| || | ||
Sbjct 3358164 TTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTC 3358223
Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAACA 12980
|||||| ||| ||||| |||| | ||| ||||| || || | ||| | ||||
Sbjct 3358224 CATAAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACCAACA 3358282
Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040
| || |||||||| || || |||| ||| || |||| ||||| || || ||||
Sbjct 3358283 GACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATT 3358342
Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100
| || |||| ||| ||||| | ||| | || || || ||| || || | || |
Sbjct 3358343 TGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATGATCT 3358402
Query 13101 CTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACATCAT-ACATGCAAA 13158
| | | | || || | | ||| | | | |||| |||||||| ||| |||||
Sbjct 3358403 CAATGA-TGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAAA 3358460
Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218
||||| ||||| || || || | || | ||| || || || || ||||| |||||
Sbjct 3358461 GTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCAT 3358520
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
|| || ||||| || | |||||| || | ||||| || ||| || ||||| ||
Sbjct 3358521 CAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTC 3358580
Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACT 13337
|| || || ||||| || | || || ||| | || | | | | |||||
Sbjct 3358581 CACGGCAGCGAACGCAATGATTCTCTCGCCA-AAGTTCGCCGCCTTCGATGAAATCCAAG 3358639
Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397
||||| | || ||| | || || | ||| |||| || || || || | ||
Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699
Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457
||| ||||| || |||||| ||||| |||| | ||| ||||| || || |
Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGT 3358759
Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517
| | ||| ||||| || ||||| || ||||| ||||| | ||| || | || || || |
Sbjct 3358760 GCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCT 3358819
Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577
| | || | || | | || || ||||| || || || || ||||| || |
Sbjct 3358820 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGG 3358879
Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637
| || | || ||||| | ||||| || | || | ||| || | || |
Sbjct 3358880 CGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAAGT 3358939
Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685
|||| || | ||| ||||| || || ||||| || || || ||||||
Sbjct 3358940 CTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430965707243556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |