Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 >seq4 Length=23952536 Score = 131 bits (144), Expect = 1e-25 Identities = 532/828 (64%), Gaps = 8/828 (1%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||||| |||| |||| || || ||||| || || || || | ||| || | || Sbjct 3358164 TTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTC 3358223 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAACA 12980 |||||| ||| ||||| |||| | ||| ||||| || || | ||| | |||| Sbjct 3358224 CATAAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACCAACA 3358282 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | || |||||||| || || |||| ||| || |||| ||||| || || |||| Sbjct 3358283 GACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATT 3358342 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 | || |||| ||| ||||| | ||| | || || || ||| || || | || | Sbjct 3358343 TGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATGATCT 3358402 Query 13101 CTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACATCAT-ACATGCAAA 13158 | | | | || || | | ||| | | | |||| |||||||| ||| ||||| Sbjct 3358403 CAATGA-TGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAAA 3358460 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| ||||| || || || | || | ||| || || || || ||||| ||||| Sbjct 3358461 GTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCAT 3358520 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || || ||||| || | |||||| || | ||||| || ||| || ||||| || Sbjct 3358521 CAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTC 3358580 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACT 13337 || || || ||||| || | || || ||| | || | | | | ||||| Sbjct 3358581 CACGGCAGCGAACGCAATGATTCTCTCGCCA-AAGTTCGCCGCCTTCGATGAAATCCAAG 3358639 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 ||||| | || ||| | || || | ||| |||| || || || || | || Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 ||| ||||| || |||||| ||||| |||| | ||| ||||| || || | Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGT 3358759 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | | ||| ||||| || ||||| || ||||| ||||| | ||| || | || || || | Sbjct 3358760 GCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCT 3358819 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | | || | || | | || || ||||| || || || || ||||| || | Sbjct 3358820 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGG 3358879 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637 | || | || ||||| | ||||| || | || | ||| || | || | Sbjct 3358880 CGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAAGT 3358939 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| || | ||| ||||| || || ||||| || || || |||||| Sbjct 3358940 CTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965707243556