Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 170 4e-37 seq3 132 1e-25 seq4 113 1e-19 >seq2 Length=27840087 Score = 170 bits (188), Expect = 4e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || ||||| || || || ||||| || ||||| | ||| ||||| | ||| Sbjct 14207470 TGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGC 14207529 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| ||||| | ||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 14207530 TTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTG 14207589 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | |||||| ||||| ||||| || || || |||||||| || Sbjct 14207590 GCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTT 14207649 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| ||||||||| || Sbjct 14207650 AGGGTTTTAACAAAGATCTGCATTGTG 14207676 >seq3 Length=22052390 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| ||||| |||||||| | || | || ||| Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || || || || || | ||| ||||| || || ||||| || ||||| Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||||||| ||| || ||||| | || || ||| Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || | ||||| || || |||||||||||| Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941 >seq4 Length=23952536 Score = 113 bits (124), Expect = 1e-19 Identities = 205/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649 || ||||| || |||||| | || |||| | |||||||||||| | || | || Sbjct 633118 CTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTTCTGCGC 633177 Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATAT 238709 ||||||||||| |||||||| | || ||||| | | || | | || ||| ||| Sbjct 633178 ATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGTAT 633237 Query 238710 AGTAT-TTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAACGGATACGTAG 238767 || || |||| ||||||| || ||| || || || ||| ||||| || || ||||| | Sbjct 633238 AGCATATTAT-TGAACGACAAGTACAGTCTGGATGG-ACGTGATCCGAATGGCTACGTTG 633295 Query 238768 GTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTG 238827 |||| |||||||| || |||| | ||||| | ||| ||| | | ||||||| Sbjct 633296 GTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTG 633355 Query 238828 GAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGC 238882 | || || | || ||||| ||| |||| ||| ||| |||||||| ||||| Sbjct 633356 GTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAATGC 633410 Score = 95.1 bits (104), Expect = 3e-14 Identities = 342/533 (64%), Gaps = 3/533 (1%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || || || |||||||| ||||| || ||||| ||| | ||||| | || | Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 || | ||||| | || | ||||| || || | || || || ||||| | Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 ||||| || ||||| || ||||| || ||| ||| | || ||||| || || Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | ||||| || || || || || || || || ||| | || || ||||||| Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 |||| | | || ||||| ||||| ||| | ||| | | || || | Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688 Query 269052 CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA--TAAA 269109 | || ||| ||| | ||| | ||| | || ||||| || |||| | | Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628 Query 269110 CGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168 ||| || ||| | || || || | |||| || || || || || || || |||| Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568 Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228 || || |||||| | ||||||||| |||||||| | || || ||||| || | | Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508 Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 | ||||| || || ||||| | ||||| || || || || ||||| ||| Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCT 3358455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151351517216024