Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 170 4e-37
seq3 132 1e-25
seq4 113 1e-19
>seq2
Length=27840087
Score = 170 bits (188), Expect = 4e-37
Identities = 162/207 (78%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || ||||| || || || ||||| || ||||| | ||| ||||| | |||
Sbjct 14207470 TGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGC 14207529
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| ||||| | ||| ||||| ||||| ||||||||||| ||||| |||||
Sbjct 14207530 TTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTG 14207589
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| ||||| || | |||||| ||||| ||||| || || || |||||||| ||
Sbjct 14207590 GCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTT 14207649
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| ||||| ||||||||| ||
Sbjct 14207650 AGGGTTTTAACAAAGATCTGCATTGTG 14207676
>seq3
Length=22052390
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| ||||| |||||||| | || | || |||
Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || || || || || || | ||| ||||| || || ||||| || |||||
Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| || || || || || | ||||||| ||| || ||||| | || || |||
Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || | ||||| || || ||||||||||||
Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941
>seq4
Length=23952536
Score = 113 bits (124), Expect = 1e-19
Identities = 205/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649
|| ||||| || |||||| | || |||| | |||||||||||| | || | ||
Sbjct 633118 CTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTTCTGCGC 633177
Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATAT 238709
||||||||||| |||||||| | || ||||| | | || | | || ||| |||
Sbjct 633178 ATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGTAT 633237
Query 238710 AGTAT-TTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAACGGATACGTAG 238767
|| || |||| ||||||| || ||| || || || ||| ||||| || || ||||| |
Sbjct 633238 AGCATATTAT-TGAACGACAAGTACAGTCTGGATGG-ACGTGATCCGAATGGCTACGTTG 633295
Query 238768 GTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTG 238827
|||| |||||||| || |||| | ||||| | ||| ||| | | |||||||
Sbjct 633296 GTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTG 633355
Query 238828 GAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGC 238882
| || || | || ||||| ||| |||| ||| ||| |||||||| |||||
Sbjct 633356 GTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAATGC 633410
Score = 95.1 bits (104), Expect = 3e-14
Identities = 342/533 (64%), Gaps = 3/533 (1%)
Strand=Plus/Minus
Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811
|||| | || || || |||||||| ||||| || ||||| ||| | ||||| | || |
Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928
Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871
|| | ||||| | || | ||||| || || | || || || ||||| |
Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868
Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931
||||| || ||||| || ||||| || ||| ||| | || ||||| || ||
Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808
Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991
| ||||| | ||||| || || || || || || || || ||| | || || |||||||
Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748
Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051
|||| | | || ||||| ||||| ||| | ||| | | || || |
Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688
Query 269052 CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA--TAAA 269109
| || ||| ||| | ||| | ||| | || ||||| || |||| | |
Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628
Query 269110 CGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168
||| || ||| | || || || | |||| || || || || || || || ||||
Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568
Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228
|| || |||||| | ||||||||| |||||||| | || || ||||| || | |
Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508
Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281
| ||||| || || ||||| | ||||| || || || || ||||| |||
Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCT 3358455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151351517216024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |