Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=27840087 Score = 104 bits (114), Expect = 2e-17 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 |||||||||||||| | ||| || || | ||| || | ||| ||||| |||| | || | Sbjct 545137 ATGCGTTCGCATATGAACTGGGCAATGCGGTCGCCATGCTTCACCTCGAAGT--CCGTGT 545194 Query 5375 CCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAG 5432 |||| || || || || || || | ||| || || || || || || | ||| || | Sbjct 545195 CCGAGTGATTGAAGAGGACAACACCTAAATTTCCACGATAATCCTCATCCACAACACCGG 545254 Query 5433 CGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTA 5490 ||||||| |||||||||| || || || || ||||| || ||||||| ||| ||||| Sbjct 545255 CGCCCACATCGATAAAGTTCTTTACGGCCAGCCCGGAGCGCGGTGCTACGCGACCGTA 545312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447732613115360