Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4 114 7e-21 seq5 113 2e-20 seq1 105 3e-18 >seq4 Length=23952536 Score = 114 bits (126), Expect = 7e-21 Identities = 89/105 (85%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCT 11485 || || |||| || |||||| |||| |||||||||| |||||||||| |||||| Sbjct 13614893 AATTAAAGAAAAAAAGAAAAAT-AAATGGCTGGCCCATGAGGGGATCGAACCCGCGACCT 13614835 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 13614834 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 13614790 Score = 113 bits (124), Expect = 2e-20 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | |||||| | |||| || ||||||||| |||||||||| ||||||||||| Sbjct 13620004 ATAAAAAATTAAAAGAAAAAAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCG 13619945 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| ||||||||||||||| Sbjct 13619944 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13619906 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| | ||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 22951513 ATAAAATAAGTAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 22951454 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 22951453 GACGCTCTAACCAGCTGAGCTAATGGGCC 22951425 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 18938397 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 18938338 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 18938337 TGAGCTAATGGGCCG 18938323 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 22951693 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 22951634 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 22951633 CTGAGCTAATGGGCC 22951619 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 22951330 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 22951271 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 22951270 TGAGCTAATGGGCC 22951257 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| || |||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct 22951949 GGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGTTAATGGG 22952008 Query 11528 CC 11529 || Sbjct 22952009 CC 22952010 >seq5 Length=2233968 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| | || |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 640487 AAAATACCAGAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 640428 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||||||||| Sbjct 640427 CGCTCTAACCAGCTGAGCTAATGGGCCG 640400 >seq1 Length=29979347 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 26996264 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 26996323 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 26996324 CTGAGCTAATGGGCC 26996338 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481071955528