Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 7e-21
seq5 113 2e-20
seq1 105 3e-18
>seq4
Length=23952536
Score = 114 bits (126), Expect = 7e-21
Identities = 89/105 (85%), Gaps = 4/105 (4%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCT 11485
|| || |||| || |||||| |||| |||||||||| |||||||||| ||||||
Sbjct 13614893 AATTAAAGAAAAAAAGAAAAAT-AAATGGCTGGCCCATGAGGGGATCGAACCCGCGACCT 13614835
Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 13614834 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 13614790
Score = 113 bits (124), Expect = 2e-20
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490
||| | |||||| | |||| || ||||||||| |||||||||| |||||||||||
Sbjct 13620004 ATAAAAAATTAAAAGAAAAAAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCG 13619945
Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||| |||| |||||||||||||||
Sbjct 13619944 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13619906
Score = 109 bits (120), Expect = 3e-19
Identities = 78/89 (88%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| | ||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 22951513 ATAAAATAAGTAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 22951454
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||||||||
Sbjct 22951453 GACGCTCTAACCAGCTGAGCTAATGGGCC 22951425
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 18938397 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 18938338
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 18938337 TGAGCTAATGGGCCG 18938323
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 22951693 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 22951634
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 22951633 CTGAGCTAATGGGCC 22951619
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 22951330 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 22951271
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 22951270 TGAGCTAATGGGCC 22951257
Score = 87.8 bits (96), Expect = 9e-13
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| || |||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 22951949 GGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGTTAATGGG 22952008
Query 11528 CC 11529
||
Sbjct 22952009 CC 22952010
>seq5
Length=2233968
Score = 113 bits (124), Expect = 2e-20
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||| | || |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 640487 AAAATACCAGAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 640428
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||| |||| ||||||||||||||||
Sbjct 640427 CGCTCTAACCAGCTGAGCTAATGGGCCG 640400
>seq1
Length=29979347
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 26996264 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 26996323
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 26996324 CTGAGCTAATGGGCC 26996338
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261481071955528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |