Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq2 131 2e-25
seq3 84.2 2e-11
>seq6
Length=26536676
Score = 134 bits (148), Expect = 1e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||||||||||||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 9462011 CACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 9462070
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || | ||||| | | ||||||||||| |||||||| || ||||| |
Sbjct 9462071 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 9462130
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | | ||||| || | |||||||||||
Sbjct 9462131 GATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTT 9462190
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| | ||| || || |||||||||||||
Sbjct 9462191 GCCAGTCAAAGTCTTGACGAAGATCTGCATGC 9462222
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || ||||| || | ||| || ||| || |||| |||||||||||| || ||
Sbjct 9462252 GTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCA 9462311
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| | | ||||||||||| |||||||| || ||||| | || || |||||
Sbjct 9462312 GCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTA 9462371
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| | | ||||| | | | || || || | |||||||| || ||||| | |||
Sbjct 9462372 ACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTC 9462431
Query 94991 TTCACAAAGATCTGCAT 95007
|| || |||||||||||
Sbjct 9462432 TTGACGAAGATCTGCAT 9462448
>seq2
Length=27840087
Score = 131 bits (144), Expect = 2e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||||||| || ||||| || | ||| || ||| || |||| ||||||
Sbjct 185580 CACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 185521
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| | | ||||||||||| || || || |||||||| |
Sbjct 185520 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTG 185461
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | | ||||| || | || ||||| ||
Sbjct 185460 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTT 185401
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||||||| || ||||| |||||
Sbjct 185400 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||||||||| || || || ||||| | ||| || ||| | |||| ||| ||
Sbjct 14207463 CACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 14207522
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || || || ||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 14207523 CAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14207582
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || || ||||| ||| || || | | ||||| |||| |||||||| ||
Sbjct 14207583 GATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14207642
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||| ||||||||||||||
Sbjct 14207643 ACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
>seq3
Length=22052390
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || || ||| | ||||| | | ||||||||||| ||||| || || ||
Sbjct 1975100 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTT 1975041
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||| || ||||||||| | | || || | | || || || | |||||
Sbjct 1975040 ATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGAT 1974981
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| ||||| || | |||||| || |||||||||||
Sbjct 1974980 GGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448273391632080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |