Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 seq4 154 1e-32 >seq2 Length=27840087 Score = 156 bits (172), Expect = 4e-33 Identities = 497/755 (66%), Gaps = 18/755 (2%) Strand=Plus/Minus Query 147450 TGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTA 147509 || || || || || ||| | ||||| |||| ||||| || | ||| | || |||| Sbjct 27784969 TGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTA 27784910 Query 147510 AACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAA 147569 | |||||||||||||| || || || | || || ||||| | ||| || |||||| | Sbjct 27784909 TAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGA 27784850 Query 147570 GCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAG 147629 || || | ||| ||||| | | ||||| || || | ||||| | | ||| Sbjct 27784849 GCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAA 27784790 Query 147630 TTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTT 147689 | ||||||||| | | || || | ||||||| |||| |||| |||| ||| ||| Sbjct 27784789 TCCCAAAGATCTGTTG-GTGATT--TTTTCCACATATCATACTGCAAAATTCCTTTGCTT 27784733 Query 147690 GCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGA 147749 | || || ||| | |||| || |||| ||| | | ||||| ||| | | || Sbjct 27784732 ACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTC-ACA-GCTGG 27784675 Query 147750 CTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTT 147807 ||| | || ||||| || |||||||| |||||| | |||||| || || Sbjct 27784674 CTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCAC 27784615 Query 147808 GGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATA 147866 | || ||||| || ||| | || | || | ||||||| ||||| | || ||| Sbjct 27784614 GACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATA 27784556 Query 147867 CCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAG 147926 || || || ||||| | ||||| ||| || ||| | ||| || || |||| | Sbjct 27784555 CCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATA 27784496 Query 147927 TCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAG 147986 || || |||||||| | || || ||||| | | ||| ||| | | ||| |||||| Sbjct 27784495 TCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAG 27784436 Query 147987 TC-GAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACA 148045 || ||| ||| || | | |||| |||| | || || || ||||| ||||| Sbjct 27784435 TCATAAGATTT----CTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTACA 27784380 Query 148046 CACGGCCGTTTC-TCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTC 148104 ||| || |||| || || || ||||| ||| ||||| | |||||||| ||| | Sbjct 27784379 CACAGCTATTTCATCTGGTGCCG-AATATTCAACTATTTCTGTGCACAGATTACTGCATT 27784321 Query 148105 GAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATG 148163 || ||| | |||| ||| || |||| ||||| | | | || ||||| | |||| Sbjct 27784320 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAG-TCCTTAAATAACATG 27784262 Query 148164 TATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198 || |||| || ||||| ||||||| ||||| || Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | ||||| ||||| |||| || || | ||||| | || | ||| | Sbjct 14207676 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 14207617 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||||||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 14207616 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 14207557 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | || || | | ||||| ||| | ||||||| | | | | |||||| Sbjct 14207556 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 14207497 Query 26945 TAACATTCAAAAAGAATCTAC 26965 ||||| |||||||| || || Sbjct 14207496 CAACATCCAAAAAGAGTCAAC 14207476 >seq4 Length=23952536 Score = 154 bits (170), Expect = 1e-32 Identities = 216/298 (72%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 || || || ||||| | || |||| ||||| ||| || || ||||| ||||| | Sbjct 633112 GACGATCTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTT 633171 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || |||||||| ||||||||||||||| | |||||||| |||| || || |||||||| Sbjct 633172 CTGCGCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTT 633231 Query 71798 GAGTATTCTAT-TTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856 |||||| || |||| | ||||| | |||||||| || || || ||||| || || || Sbjct 633232 GAGTATAGCATATTAT-TGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTA 633290 Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTA-GAACGTCAAG 71915 || |||||||||||| ||| | || ||||||| ||| || | || || Sbjct 633291 CGTTGGTTGCATGTGGTCCATCGGTGGGATTCACGA-CCAAGGTTGGAAGGAGCGCGCGA 633349 Query 71916 TGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 | |||||||| |||||||||||||| | | || ||| | || ||||| |||| || Sbjct 633350 TATTTGGTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAA 633407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478643385136160