Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 156 4e-33
seq4 154 1e-32
>seq2
Length=27840087
Score = 156 bits (172), Expect = 4e-33
Identities = 497/755 (66%), Gaps = 18/755 (2%)
Strand=Plus/Minus
Query 147450 TGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTA 147509
|| || || || || ||| | ||||| |||| ||||| || | ||| | || ||||
Sbjct 27784969 TGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTA 27784910
Query 147510 AACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAA 147569
| |||||||||||||| || || || | || || ||||| | ||| || |||||| |
Sbjct 27784909 TAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGA 27784850
Query 147570 GCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAG 147629
|| || | ||| ||||| | | ||||| || || | ||||| | | |||
Sbjct 27784849 GCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAA 27784790
Query 147630 TTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTT 147689
| ||||||||| | | || || | ||||||| |||| |||| |||| ||| |||
Sbjct 27784789 TCCCAAAGATCTGTTG-GTGATT--TTTTCCACATATCATACTGCAAAATTCCTTTGCTT 27784733
Query 147690 GCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGA 147749
| || || ||| | |||| || |||| ||| | | ||||| ||| | | ||
Sbjct 27784732 ACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTC-ACA-GCTGG 27784675
Query 147750 CTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTT 147807
||| | || ||||| || |||||||| |||||| | |||||| || ||
Sbjct 27784674 CTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCAC 27784615
Query 147808 GGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATA 147866
| || ||||| || ||| | || | || | ||||||| ||||| | || |||
Sbjct 27784614 GACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATA 27784556
Query 147867 CCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAG 147926
|| || || ||||| | ||||| ||| || ||| | ||| || || |||| |
Sbjct 27784555 CCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATA 27784496
Query 147927 TCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAG 147986
|| || |||||||| | || || ||||| | | ||| ||| | | ||| ||||||
Sbjct 27784495 TCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAG 27784436
Query 147987 TC-GAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACA 148045
|| ||| ||| || | | |||| |||| | || || || ||||| |||||
Sbjct 27784435 TCATAAGATTT----CTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTACA 27784380
Query 148046 CACGGCCGTTTC-TCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTC 148104
||| || |||| || || || ||||| ||| ||||| | |||||||| ||| |
Sbjct 27784379 CACAGCTATTTCATCTGGTGCCG-AATATTCAACTATTTCTGTGCACAGATTACTGCATT 27784321
Query 148105 GAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATG 148163
|| ||| | |||| ||| || |||| ||||| | | | || ||||| | ||||
Sbjct 27784320 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAG-TCCTTAAATAACATG 27784262
Query 148164 TATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198
|| |||| || ||||| ||||||| ||||| ||
Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
|| |||||| | ||||| ||||| |||| || || | ||||| | || | ||| |
Sbjct 14207676 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 14207617
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
|| ||||||||| | |||||| ||||| ||||||||||| || ||||| ||
Sbjct 14207616 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 14207557
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
||| || | || || | | ||||| ||| | ||||||| | | | | ||||||
Sbjct 14207556 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 14207497
Query 26945 TAACATTCAAAAAGAATCTAC 26965
||||| |||||||| || ||
Sbjct 14207496 CAACATCCAAAAAGAGTCAAC 14207476
>seq4
Length=23952536
Score = 154 bits (170), Expect = 1e-32
Identities = 216/298 (72%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737
|| || || ||||| | || |||| ||||| ||| || || ||||| ||||| |
Sbjct 633112 GACGATCTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTT 633171
Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797
|| |||||||| ||||||||||||||| | |||||||| |||| || || ||||||||
Sbjct 633172 CTGCGCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTT 633231
Query 71798 GAGTATTCTAT-TTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856
|||||| || |||| | ||||| | |||||||| || || || ||||| || || ||
Sbjct 633232 GAGTATAGCATATTAT-TGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTA 633290
Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTA-GAACGTCAAG 71915
|| |||||||||||| ||| | || ||||||| ||| || | || ||
Sbjct 633291 CGTTGGTTGCATGTGGTCCATCGGTGGGATTCACGA-CCAAGGTTGGAAGGAGCGCGCGA 633349
Query 71916 TGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973
| |||||||| |||||||||||||| | | || ||| | || ||||| |||| ||
Sbjct 633350 TATTTGGTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAA 633407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478643385136160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |