Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq2 98.7 9e-16 seq3 91.5 1e-13 >seq4 Length=23952536 Score = 105 bits (116), Expect = 6e-18 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 104587 CGTTTGTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTA 104646 |||| |||||||| ||| ||| || || || ||||||||||| ||||| || || | Sbjct 3358162 CGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATC 3358221 Query 104647 TTCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTA-GCCAAGCTCGATCAA 104705 | |||||| ||| |||||| || || | ||||| | | || || || | ||| Sbjct 3358222 TCCATAAAGGTGAATGGATTCTTCGTATT-GTAGATTTTGCCAACACCGAGTTCCACCAA 3358280 Query 104706 CAGTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCA 104764 ||| |||||||| |||||||| || |||||| |||| |||| | ||||||||| | || Sbjct 3358281 CAGACGATCCGCAACAAATTCAATATACTCGGACAT-CAATGCACAATTCATGCCAATCA 3358339 Query 104765 TTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805 | |||||| | ||| | || | ||| |||| ||| ||| Sbjct 3358340 ATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATG 3358380 >seq2 Length=27840087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 ||||||||||| | || || ||||| | || || || | ||||| | || |||||| Sbjct 185366 ACAAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGC 185425 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || |||||||||||| | ||||| ||||| |||||||| || || || || | Sbjct 185426 CCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAG 185485 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGA 24163 |||| ||| | ||||| | || ||||||||| || || ||| ||| | | ||| ||| Sbjct 185486 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTC--CGA 185543 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||| || || || || | || || ||| Sbjct 185544 CTACAACATTCAGAAGGAGTCCACTTTGCACTTGGTG 185580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| |||| || || | || || | || ||||| | Sbjct 14207676 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 14207617 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 14207616 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 14207557 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | | ||||||||| | ||||||| | | | ||| || Sbjct 14207556 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 14207497 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| || || | || || ||| Sbjct 14207496 CAACATCCAAAAAGAGTCAACCTTGCACTTGGTG 14207463 >seq3 Length=22052390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| ||||| || || || ||||| ||| | ||||| | || ||||||| Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||||| | | | | |||||| ||||||||||| || ||||| ||||| Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Query 24195 TTAGT 24199 || || Sbjct 1975437 TTGGT 1975441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| || || ||||| | || ||| | || || ||| | Sbjct 1974941 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCC 1975000 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| ||||| ||| | ||||| |||||| || || || || || || || || Sbjct 1975001 TTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||| | ||||| | || |||||||||||| ||||||| Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 1975101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429919347772590