Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq4 105 6e-18
seq2 98.7 9e-16
seq3 91.5 1e-13
>seq4
Length=23952536
Score = 105 bits (116), Expect = 6e-18
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 104587 CGTTTGTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTA 104646
|||| |||||||| ||| ||| || || || ||||||||||| ||||| || || |
Sbjct 3358162 CGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATC 3358221
Query 104647 TTCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTA-GCCAAGCTCGATCAA 104705
| |||||| ||| |||||| || || | ||||| | | || || || | |||
Sbjct 3358222 TCCATAAAGGTGAATGGATTCTTCGTATT-GTAGATTTTGCCAACACCGAGTTCCACCAA 3358280
Query 104706 CAGTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCA 104764
||| |||||||| |||||||| || |||||| |||| |||| | ||||||||| | ||
Sbjct 3358281 CAGACGATCCGCAACAAATTCAATATACTCGGACAT-CAATGCACAATTCATGCCAATCA 3358339
Query 104765 TTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805
| |||||| | ||| | || | ||| |||| ||| |||
Sbjct 3358340 ATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATG 3358380
>seq2
Length=27840087
Score = 98.7 bits (108), Expect = 9e-16
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045
||||||||||| | || || ||||| | || || || | ||||| | || ||||||
Sbjct 185366 ACAAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGC 185425
Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105
|| |||||||||||| | ||||| ||||| |||||||| || || || || |
Sbjct 185426 CCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAG 185485
Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGA 24163
|||| ||| | ||||| | || ||||||||| || || ||| ||| | | ||| |||
Sbjct 185486 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTC--CGA 185543
Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| |||||||| || || || || | || || |||
Sbjct 185544 CTACAACATTCAGAAGGAGTCCACTTTGCACTTGGTG 185580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
|| |||||| | ||||| ||||| |||| || || | || || | || ||||| |
Sbjct 14207676 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 14207617
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
|| ||||||||| | |||||| ||||| ||||||||||| || ||||| ||
Sbjct 14207616 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 14207557
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
||| ||| | || || | | ||||||||| | ||||||| | | | ||| ||
Sbjct 14207556 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 14207497
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| |||||||| || || | || || |||
Sbjct 14207496 CAACATCCAAAAAGAGTCAACCTTGCACTTGGTG 14207463
>seq3
Length=22052390
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
|||||| ||||| ||||| || || || ||||| ||| | ||||| | || |||||||
Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
||||| ||||||| | | | | |||||| ||||||||||| || ||||| |||||
Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436
Query 24195 TTAGT 24199
|| ||
Sbjct 1975437 TTGGT 1975441
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||||||||| | || || ||||| || || ||||| | || ||| | || || ||| |
Sbjct 1974941 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCC 1975000
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||| ||||| ||| | ||||| |||||| || || || || || || || ||
Sbjct 1975001 TTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||| ||| | ||||| | || |||||||||||| |||||||
Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 1975101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429919347772590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |