Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 seq6 125 7e-24 seq3 116 3e-21 seq4 82.4 7e-11 >seq2 Length=27840087 Score = 156 bits (172), Expect = 4e-33 Identities = 175/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| ||| ||||| || || | || |||||||| ||||||||||| Sbjct 185603 ATGATGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAG 185544 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || ||||| ||||| ||||||||||| ||| |||| | ||||||||| || Sbjct 185543 TCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT 185484 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || |||||||| |||||||| ||| || ||||| | ||| | || || | || | Sbjct 185483 GGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGC 185424 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||| ||| || ||||| |||||||| ||||| || ||||| Sbjct 185423 TCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | ||| ||||| ||||| |||||||| ||| Sbjct 14207446 CCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAA 14207505 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||||| || |||||| ||||||||| || ||||| Sbjct 14207506 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGA 14207565 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || |||| | ||| | ||||| | | |||| Sbjct 14207566 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACC 14207625 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| ||||| ||||| || || |||||||| Sbjct 14207626 TCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGC 145667 |||| | |||| | ||||| |||||||||||||| || || | || || || | || Sbjct 27784415 CACAAACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCG- 27784357 Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| || || || | ||||| ||| || ||||| || ||||| | |||||| || | Sbjct 27784356 AATATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGT 27784297 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 | ||||| ||||| || | |||||| | | |||||| || |||||||| || || Sbjct 27784296 TGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTG 27784239 >seq6 Length=26536676 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| || || | || |||||||| || |||||||| ||| Sbjct 9461993 GCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGA 9462052 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 9462053 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 9462112 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | ||| | || || | || ||||| Sbjct 9462113 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGAC 9462172 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || | ||| || ||||| ||||||||| Sbjct 9462173 CTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || | ||| | |||||||||||| || ||||| || ||| Sbjct 9462221 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGA 9462280 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 9462281 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 9462340 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | || | || || | || ||| | Sbjct 9462341 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAAC 9462400 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | ||| || ||||| |||||||| Sbjct 9462401 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462448 >seq3 Length=22052390 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | |||||||||||| || || ||||| || | Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || |||||||| ||| |||| | ||||||||| || || || Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || || || ||||| | ||| | ||||||| | ||| | Sbjct 1975051 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1974992 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | |||||| ||||| |||||||| Sbjct 1974991 TCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || ||||| | ||| |||||||||||||||||||||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || |||||||| ||| |||| | ||||||||| || || || Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 1975339 ATACCTTCCTTGTC 1975326 >seq4 Length=23952536 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 46177 GTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGG 46235 |||||||| |||| ||| |||||| |||||| | ||||||| | || || | || Sbjct 3358583 GTGGAGGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGT 3358524 Query 46236 CATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATAC 46295 | | |||||||| ||||| || ||| ||| |||| || |||||||||||| ||||| Sbjct 3358523 C-TGATGCCCGGTCTGACCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTG 3358465 Query 46296 GGACTTTGC 46304 |||||||| Sbjct 3358464 TGACTTTGC 3358456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994049291520