Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq2 86.0 5e-12
seq6 84.2 2e-11
seq3 84.2 2e-11
>seq2
Length=27840087
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||| ||||||||||| || ||||||||||||| || || | |||
Sbjct 185582 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 185523
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| || | || || ||||| || || || | |||||||||||
Sbjct 185522 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 185463
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||| |||||| |||| || ||||
Sbjct 185462 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGG 185405
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941
| || ||||| || ||||| || || || |||||||||||
Sbjct 185404 TCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGTA 185365
>seq6
Length=26536676
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| |||| || |||||||| || ||||||||||||| |
Sbjct 9461994 CCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 9462053
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||||| || ||||| || | || || ||||| || || ||
Sbjct 9462054 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462113
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || ||| || | | | ||||| ||||||
Sbjct 9462114 ATACCCTCCTTGTCTTGGATCTTGGC--CTTAACATTCTCAATGGTGTCCGAGGGCTCGA 9462171
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||||||| || |||| || ||||| || ||||||||
Sbjct 9462172 CCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
>seq3
Length=22052390
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || || |||||||| || || |||||||| | || ||| | | ||
Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||| ||||| || | || || ||||| || || || | ||||| || ||
Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | ||| || | | | || ||| ||||| |||| |||||||||
Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
||||| |||| ||||| || || ||||||||||||
Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405072310182220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |