Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq2 86.0 4e-12 >seq6 Length=26536676 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | ||||| ||||| | ||| |||| ||||| |||||||||||||| Sbjct 9511242 ATGGCGACCGTCAACGTGAATCGCAGTGTTACGGATATCTTCTATCGCTACAAAATGCCA 9511183 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| || ||||| || || ||||| || ||||| || ||||| ||| | ||||||||| Sbjct 9511182 CGCCTCCAGGCCAAAGTGGAAGGTAAAGGCAACGGCATCAAAACGGTCCTCGTCAACATG 9511123 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || | ||| ||||| | || || ||||| || || || || || || || Sbjct 9511122 GCCGAGGTGGCAAGAGCGATCGGAAGACCAGCTACCTATCCAACCAAGTACTTTGGCTGT 9511063 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || | ||||| || ||||| || ||||| || Sbjct 9511062 GAGTTGGGCGCCCAAACGCAATTCGATCATAA 9511031 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 ||||| || ||||| || || ||||||||| | | || |||||||||||| || || || Sbjct 9510906 AACGAACGTTTCATTGTGAATGGATCGCATGA-TGTGAACAAGCTGCAGGATTTGCTCGA 9510848 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 || |||||||| || || ||||| |||| || ||||||||||| ||||| | || | Sbjct 9510847 TGGTTTTATTCGGAAATTCGTGCTCTGTCCCGAGTGCGATAACCCTGAGACAAATCTAAC 9510788 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 ||| || |||||| | |||||||| || || || || || || | ||||||| Sbjct 9510787 TGTCTCGGCCAAGAATCAGACCATCTCGCAATCGTGTAAGGCCTGTGGCTTCCATGGCTT 9510728 Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | ||||| | || || | ||| |||||||||| ||| Sbjct 9510727 ACTAAAGGTCAACCACAAGGTGAATACGTACATTGTGAAGAATCCGCCA 9510679 >seq2 Length=27840087 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | || ||| ||||| || ||||| || || Sbjct 14207445 ACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGA 14207504 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || ||||| || || ||||| ||||| || || ||||| | || Sbjct 14207505 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGG 14207564 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| || || || ||||||| || ||||| | || ||| | Sbjct 14207565 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATC-CGACGGTTCGA 14207623 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || |||||||| | |||||| || || |||||||| Sbjct 14207624 CCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934226866918