Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 1e-25
seq2 86.0 4e-12
>seq6
Length=26536676
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| |||| | ||||| ||||| | ||| |||| ||||| ||||||||||||||
Sbjct 9511242 ATGGCGACCGTCAACGTGAATCGCAGTGTTACGGATATCTTCTATCGCTACAAAATGCCA 9511183
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
||| || ||||| || || ||||| || ||||| || ||||| ||| | |||||||||
Sbjct 9511182 CGCCTCCAGGCCAAAGTGGAAGGTAAAGGCAACGGCATCAAAACGGTCCTCGTCAACATG 9511123
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
| || || || | ||| ||||| | || || ||||| || || || || || || ||
Sbjct 9511122 GCCGAGGTGGCAAGAGCGATCGGAAGACCAGCTACCTATCCAACCAAGTACTTTGGCTGT 9511063
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| | ||||| || ||||| || ||||| ||
Sbjct 9511062 GAGTTGGGCGCCCAAACGCAATTCGATCATAA 9511031
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433
||||| || ||||| || || ||||||||| | | || |||||||||||| || || ||
Sbjct 9510906 AACGAACGTTTCATTGTGAATGGATCGCATGA-TGTGAACAAGCTGCAGGATTTGCTCGA 9510848
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493
|| |||||||| || || ||||| |||| || ||||||||||| ||||| | || |
Sbjct 9510847 TGGTTTTATTCGGAAATTCGTGCTCTGTCCCGAGTGCGATAACCCTGAGACAAATCTAAC 9510788
Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553
||| || |||||| | |||||||| || || || || || || | |||||||
Sbjct 9510787 TGTCTCGGCCAAGAATCAGACCATCTCGCAATCGTGTAAGGCCTGTGGCTTCCATGGCTT 9510728
Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
|| | | ||||| | || || | ||| |||||||||| |||
Sbjct 9510727 ACTAAAGGTCAACCACAAGGTGAATACGTACATTGTGAAGAATCCGCCA 9510679
>seq2
Length=27840087
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | || | |||||| || | || ||| ||||| || ||||| || ||
Sbjct 14207445 ACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGA 14207504
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | || | || || ||||| || || ||||| ||||| || || ||||| | ||
Sbjct 14207505 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGG 14207564
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268
| |||||||||||| || || || ||||||| || ||||| | || ||| |
Sbjct 14207565 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATC-CGACGGTTCGA 14207623
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || |||||||| | |||||| || || ||||||||
Sbjct 14207624 CCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334934226866918
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |