Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 578 5e-160 seq4 233 2e-56 >seq2 Length=27840087 Score = 578 bits (640), Expect = 5e-160 Identities = 1258/1868 (67%), Gaps = 24/1868 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||||| |||||||| || ||||| ||| |||| | || || |||| | Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||||||||||| || || ||||| || || || |||||||||||| Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62088 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064 Query 62089 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | || |||| || || || |||| | || || || ||| || ||||| |||| Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| || | || |||||| | | || | || | || ||||| |||||||| || Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 |||||| |||| | |||||||| || ||||| || || | ||||||||||| || Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 ||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824 Query 62326 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383 || ||| | | | || ||||| ||| | ||||| ||||||||| | ||| Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766 Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442 || | ||| || || || | | || || ||||| || || || Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 |||||| || ||| ||||| |||||| || || || || || || || || || ||||| Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62562 ||| |||| || ||||| ||||| | || || | | ||| | | || Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587 Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 || ||||| || || ||||| || |||||||| ||||| | || | ||| || | Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527 Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682 || ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | || Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467 Query 62683 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACAT 62739 | ||| || || || || || ||| ||| | | | | | | |||||||| Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 27784407 Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 || | ||| | ||| |||| |||||| || |||| |||| | ||| ||||| | Sbjct 27784406 ATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 27784347 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| | Sbjct 27784346 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 27784287 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 |||||| | |||||| | | ||| | ||||||||||| || | |||||||| || || Sbjct 27784286 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227 Query 62920 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCGTA 62976 || ||| | | ||||||| || | | |||| | ||| | |||| ||| || Sbjct 27784226 GGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCATA 27784170 Query 62977 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATC 63036 | |||| | ||| || || || |||||||||| || ||||| |||| || Sbjct 27784169 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 27784110 Query 63037 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63096 |||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| || Sbjct 27784109 TGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 27784050 Query 63097 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156 ||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| |||||||| Sbjct 27784049 CCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAG 27783990 Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || | || | | | ||| || ||||| || ||||| ||||| || | ||||||| Sbjct 27783989 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGG 27783930 Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 | ||| || |||||||| | || | ||| |||||| | ||||| |||||||| Sbjct 27783929 TCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGG 27783870 Query 63277 -AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT 63335 | |||| ||||| || || || || || || | || || | || | || |||||| Sbjct 27783869 TACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATAC 27783811 Query 63336 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63395 || || || || || |||||| || || || | ||||||| ||| | | Sbjct 27783810 AGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTG 27783751 Query 63396 TATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATT 63454 | | | || || || || |||| || || ||||| |||||||| ||||| | Sbjct 27783750 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAAT 27783692 Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 || ||||| | || | ||| ||| | || || || || |||||||| | ||| Sbjct 27783691 TGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCA 27783632 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 || || | |||||| || |||| || || || ||||| ||| || |||| ||| Sbjct 27783631 GATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCG 27783572 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 |||||||||| || ||||| |||||||| | || || |||||||| | ||| || Sbjct 27783571 ACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATAC 27783512 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63694 || || | || || || ||||| ||||| ||| || || || || || |||||| Sbjct 27783511 GACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATA 27783452 Query 63695 ACCGAGTT 63702 | ||||| Sbjct 27783451 GCAGAGTT 27783444 >seq4 Length=23952536 Score = 233 bits (258), Expect = 2e-56 Identities = 564/844 (67%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || ||||| ||| ||||| || || ||| ||||| || ||||| || || || | Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || | ||||| || ||||||||| | ||| || ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | || | ||| || |||||||| ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || || | ||| || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 32601 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 32656 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 32657 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 || ||| || || || || || | |||||||| | || || || ||||| || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTC- 32833 |||| ||||| || || || || || ||||| | |||||| ||| | || ||| || Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627 Query 32834 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| | |||| | |||||||||||||| || ||| |||||||| || || | Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 |||| || ||||| | ||| | ||| ||| ||||||||| |||| | || | Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| ||||| || | || || ||||| |||||||| || ||||| || | ||| |||| Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || || || || | || || || | | ||| ||||| || || || || || Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 33128 | ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGT 3358923 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||| || | | |||||||| | |||||| |||||||| ||||| ||||| ||||| Sbjct 3358924 GCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCA 3358983 Query 33189 GCCT 33192 |||| Sbjct 3358984 GCCT 3358987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606828968800