Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2 578 5e-160
seq4 233 2e-56
>seq2
Length=27840087
Score = 578 bits (640), Expect = 5e-160
Identities = 1258/1868 (67%), Gaps = 24/1868 (1%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 27785302 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 27785243
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| ||||| |||||||| || ||||| ||| |||| | || || |||| |
Sbjct 27785242 CCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACA 27785183
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||||
Sbjct 27785182 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 27785123
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62088
| | || || ||||||||| | ||||||||| || || | ||| |||| ||||
Sbjct 27785122 GTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 27785064
Query 62089 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145
| || |||| || || || |||| | || || || ||| || ||||| ||||
Sbjct 27785063 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 27785004
Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205
||| || | || |||||| | | || | || | || ||||| |||||||| ||
Sbjct 27785003 CCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCC 27784944
Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265
|||||| |||| | |||||||| || ||||| || || | ||||||||||| ||
Sbjct 27784943 AGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 27784884
Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
||| ||||| ||||| ||||| || ||||| || || | | |||| |||||| | |||
Sbjct 27784883 CAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 27784824
Query 62326 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383
|| ||| | | | || ||||| ||| | ||||| ||||||||| | |||
Sbjct 27784823 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTT 27784766
Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442
|| | ||| || || || | | || || ||||| || || ||
Sbjct 27784765 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACATAAGTCTCATA 27784707
Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502
|||||| || ||| ||||| |||||| || || || || || || || || || |||||
Sbjct 27784706 TGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTC 27784647
Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62562
||| |||| || ||||| ||||| | || || | | ||| | | ||
Sbjct 27784646 GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 27784587
Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622
|| ||||| || || ||||| || |||||||| ||||| | || | ||| || |
Sbjct 27784586 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTT 27784527
Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682
|| ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | ||
Sbjct 27784526 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467
Query 62683 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACAT 62739
| ||| || || || || || ||| ||| | | | | | | ||||||||
Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 27784407
Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799
|| | ||| | ||| |||| |||||| || |||| |||| | ||| ||||| |
Sbjct 27784406 ATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 27784347
Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859
||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| |
Sbjct 27784346 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 27784287
Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919
|||||| | |||||| | | ||| | ||||||||||| || | |||||||| || ||
Sbjct 27784286 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227
Query 62920 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCGTA 62976
|| ||| | | ||||||| || | | |||| | ||| | |||| ||| ||
Sbjct 27784226 GGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCATA 27784170
Query 62977 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATC 63036
| |||| | ||| || || || |||||||||| || ||||| |||| ||
Sbjct 27784169 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 27784110
Query 63037 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63096
|||||||| || ||||| ||| | | | | | || ||||||||||| |||||||| ||
Sbjct 27784109 TGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 27784050
Query 63097 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156
||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| ||||||||
Sbjct 27784049 CCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAG 27783990
Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216
|| | || | | | ||| || ||||| || ||||| ||||| || | |||||||
Sbjct 27783989 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGG 27783930
Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276
| ||| || |||||||| | || | ||| |||||| | ||||| ||||||||
Sbjct 27783929 TCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGG 27783870
Query 63277 -AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT 63335
| |||| ||||| || || || || || || | || || | || | || ||||||
Sbjct 27783869 TACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATAC 27783811
Query 63336 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63395
|| || || || || |||||| || || || | ||||||| ||| | |
Sbjct 27783810 AGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTG 27783751
Query 63396 TATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATT 63454
| | | || || || || |||| || || ||||| |||||||| ||||| |
Sbjct 27783750 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAAT 27783692
Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514
|| ||||| | || | ||| ||| | || || || || |||||||| | |||
Sbjct 27783691 TGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCA 27783632
Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574
|| || | |||||| || |||| || || || ||||| ||| || |||| |||
Sbjct 27783631 GATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCG 27783572
Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634
|||||||||| || ||||| |||||||| | || || |||||||| | ||| ||
Sbjct 27783571 ACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATAC 27783512
Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63694
|| || | || || || ||||| ||||| ||| || || || || || ||||||
Sbjct 27783511 GACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATA 27783452
Query 63695 ACCGAGTT 63702
| |||||
Sbjct 27783451 GCAGAGTT 27783444
>seq4
Length=23952536
Score = 233 bits (258), Expect = 2e-56
Identities = 564/844 (67%), Gaps = 21/844 (2%)
Strand=Plus/Plus
Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420
|| ||||| ||| ||||| || || ||| ||||| || ||||| || || || |
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480
|| || | ||||| || ||||||||| | ||| || ||||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540
|| | || | ||| || |||||||| ||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600
|| || | ||| || || ||||| | || ||||| ||||| ||||| | || || ||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 32601 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 32656
| || ||||| | || | | |||| | || | | || ||||| |||||
Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 32657 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715
|| ||| || || || || || | |||||||| | || || || ||||| || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775
| || |||||||| || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3358567
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTC- 32833
|||| ||||| || || || || || ||||| | |||||| ||| | || ||| ||
Sbjct 3358568 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG 3358627
Query 32834 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
||| | |||| | |||||||||||||| || ||| |||||||| || || |
Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
|||| || ||||| | ||| | ||| ||| ||||||||| |||| | || |
Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012
|||| ||||| || | || || ||||| |||||||| || ||||| || | ||| ||||
Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807
Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072
| || || || || | || || || | | ||| ||||| || || || || ||
Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867
Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 33128
| ||||| || || | ||||| ||||| | |||| | | |||| |
Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGT----TATCAGTTAAACGT 3358923
Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188
||| || | | |||||||| | |||||| |||||||| ||||| ||||| |||||
Sbjct 3358924 GCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCA 3358983
Query 33189 GCCT 33192
||||
Sbjct 3358984 GCCT 3358987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633606828968800
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