Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
seq4 105 6e-18
seq6 100 2e-16
>seq2
Length=27840087
Score = 120 bits (132), Expect = 3e-22
Identities = 159/218 (73%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || ||||| || || | || ||||| ||||||| | || || || ||
Sbjct 14207675 ACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14207616
Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|| || || |||||| | || |||| || | || ||||||||||| ||||| ||
Sbjct 14207615 TCGGATACCATCGAG--AATGTCAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 14207559
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| || ||||| | || ||||| ||||| ||||| ||||||| ||||||| | |||
Sbjct 14207558 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 14207499
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || |||||||| || || | || || |||||
Sbjct 14207498 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCT 14207461
>seq4
Length=23952536
Score = 105 bits (116), Expect = 6e-18
Identities = 203/294 (69%), Gaps = 8/294 (3%)
Strand=Plus/Minus
Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047
|||||| ||||| ||||| ||||||||||| | || | ||||| || ||| ||
Sbjct 633399 AAACTTTCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCGCGCTC 633340
Query 51048 TTTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTA 51105
|| | ||| |||||| | || | || |||||||| ||||| || || ||
Sbjct 633339 CTTCCAA--CCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCATTC 633282
Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG 51165
||||| || ||||||| ||||| | ||||| | |||||| ||| | | ||| ||
Sbjct 633281 GGATCACGTCCATCCAGACTGTACTTGTCGTTCAATAATATGCTATACTCAAGCGCC-TG 633223
Query 51166 T--CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGT 51223
| | || | | ||||| || | ||| || |||||||| |||||||||| | ||||
Sbjct 633222 TTCCGGCGTTTCG-GTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCGT 633164
Query 51224 GCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
|||| ||||| || |||||| || ||||||||||||| |||||||
Sbjct 633163 GCATTTTGCCTTCCTTGACCAGCTGCAGCTGGGCCGAGTTCCACAGATCGTCGT 633110
>seq6
Length=26536676
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || ||| ||||||| | || || ||| | ||
Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| || ||| ||||| || || ||||| || || ||
Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || ||||| || | || |||| |||||| || ||| |||||
Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
|| || || || || || | || || ||||| | ||| | || || |||||
Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGCAATTA 9461988
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24983 TGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGT 25042
|||| |||| ||| ||||| || || || ||||||||||| || || ||||||| |
Sbjct 9462464 TGTAGAAAAGAGAAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTT 9462405
Query 25043 CGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGG 25102
|| || ||| | || ||||| || || | ||| || ||| ||||| || ||
Sbjct 9462404 GGAGGTTGAGCCCTCGGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGG 9462345
Query 25103 GATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162
||||| || || || ||||| | || || || ||||| || | || |||| |||||
Sbjct 9462344 TATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCAC 9462285
Query 25163 TGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||| || || || || || || || || || ||| | || ||
Sbjct 9462284 TCTGTCCGACTAYAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 9462237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433311216394070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |