Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq4 105 6e-18 seq6 100 2e-16 >seq2 Length=27840087 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| || || | || ||||| ||||||| | || || || || Sbjct 14207675 ACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14207616 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || |||||| | || |||| || | || ||||||||||| ||||| || Sbjct 14207615 TCGGATACCATCGAG--AATGTCAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 14207559 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||| ||||| ||||| ||||||| ||||||| | ||| Sbjct 14207558 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 14207499 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || | || || ||||| Sbjct 14207498 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCT 14207461 >seq4 Length=23952536 Score = 105 bits (116), Expect = 6e-18 Identities = 203/294 (69%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 |||||| ||||| ||||| ||||||||||| | || | ||||| || ||| || Sbjct 633399 AAACTTTCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCGCGCTC 633340 Query 51048 TTTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTA 51105 || | ||| |||||| | || | || |||||||| ||||| || || || Sbjct 633339 CTTCCAA--CCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCATTC 633282 Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG 51165 ||||| || ||||||| ||||| | ||||| | |||||| ||| | | ||| || Sbjct 633281 GGATCACGTCCATCCAGACTGTACTTGTCGTTCAATAATATGCTATACTCAAGCGCC-TG 633223 Query 51166 T--CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGT 51223 | | || | | ||||| || | ||| || |||||||| |||||||||| | |||| Sbjct 633222 TTCCGGCGTTTCG-GTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCGT 633164 Query 51224 GCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||| ||||| || |||||| || ||||||||||||| ||||||| Sbjct 633163 GCATTTTGCCTTCCTTGACCAGCTGCAGCTGGGCCGAGTTCCACAGATCGTCGT 633110 >seq6 Length=26536676 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || || || | || || ||||| | ||| | || || ||||| Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGCAATTA 9461988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24983 TGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGT 25042 |||| |||| ||| ||||| || || || ||||||||||| || || ||||||| | Sbjct 9462464 TGTAGAAAAGAGAAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTT 9462405 Query 25043 CGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGG 25102 || || ||| | || ||||| || || | ||| || ||| ||||| || || Sbjct 9462404 GGAGGTTGAGCCCTCGGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGG 9462345 Query 25103 GATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||| || || || ||||| | || || || ||||| || | || |||| ||||| Sbjct 9462344 TATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCAC 9462285 Query 25163 TGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||| || || || || || || || || || ||| | || || Sbjct 9462284 TCTGTCCGACTAYAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 9462237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311216394070