Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=22052390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 38456 CATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGA 38515 ||||||||||| ||| || ||| | |||||||| || |||| ||| | || ||| || Sbjct 5974852 CATGAAGCAGAAGCCACAGCAGCTCGCCGAGGCGGGTTTCTTTTATACTGGGGTCGGCGA 5974911 Query 38516 CCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGA-GCCTGCGGACGATC 38574 | || |||||| ||||||||||||||| ||||| ||||| | | | ||||| | Sbjct 5974912 TCGCGTACGCTGTTTCAGTTGCGGCGGCGGCCTCAAGGATTGGGACGACAAC-GACGAGC 5974970 Query 38575 CGTGGGCGCAGCACGCGCGCTGG 38597 | |||| |||||| || | |||| Sbjct 5974971 CCTGGGAGCAGCATGCTCTCTGG 5974993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537581843712880