Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 295 7e-75 seq1 118 1e-21 >seq4 Length=23952536 Score = 295 bits (326), Expect = 7e-75 Identities = 616/899 (69%), Gaps = 33/899 (4%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||| |||||||| |||||||| || ||||| || | || || || Sbjct 3358104 TTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCG-ATG--TGACGCC-CA 3358159 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| ||||| ||||||||||| || ||||| || ||||| || |||| || ||| Sbjct 3358160 TACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCA 3358219 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTC----ACCGA--TCAACT 92912 | || | |||| ||||||||| | || || | ||| | ||||| || || Sbjct 3358220 TCTCCATAAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCAC- 3358277 Query 92913 CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972 ||| | | ||| || |||||||| || |||| |||||||| |||||||||| | Sbjct 3358278 ----CAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGC 3358333 Query 92973 CTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTT 93032 | | | || || ||||| || || | || |||| ||| || ||| || || Sbjct 3358334 CAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAG 3358393 Query 93033 TCAAGATTTCTATTA--CTCT-ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTA 93089 | ||| || || | | || || | || ||| | || | || | |||| | Sbjct 3358394 AGATGATCTCAATGATGCGCTCACGGCTAGGACGTT---GCACCAAATGCCGGAACATCA 3358450 Query 93090 AGCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||| |||||||| ||| || || ||||| ||||| |||||||||||| ||| || Sbjct 3358451 T-CACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTC 3358509 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | ||| || |||||||| |||||||| || || ||||| || ||| ||| Sbjct 3358510 AGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAG 3358569 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || || || |||||||| || || || | || | ||| |||| || || | || | Sbjct 3358570 AAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC--G 3358627 Query 93269 CTGA--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||| |||| | ||||||||||| ||| ||| | | || | |||||| || | Sbjct 3358628 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3358687 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || || || ||||| || || | | ||| | || ||||||||||| | || | Sbjct 3358688 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3358747 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 |||| || || || ||||||||||| || ||||| || || |||||||| | |||||| | Sbjct 3358748 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3358807 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | || ||||| || || || | ||| || ||||| ||||| || || |||||||| | Sbjct 3358808 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGG 3358867 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCC 93565 | ||||| || || | | ||| ||||| || ||| | ||| |||| | | || Sbjct 3358868 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCC 3358926 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || |||| | ||||| || ||||| || ||||| |||||||| || || || || || Sbjct 3358927 CAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGC 3358985 >seq1 Length=29979347 Score = 118 bits (130), Expect = 1e-21 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 26904662 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 26904603 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||||| || Sbjct 26904602 GTGGGTTCGAACCCCACACCTGACAAGTT 26904574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838678704720