Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq3 120 3e-22 seq6 113 4e-20 >seq2 Length=27840087 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| |||| ||||| || |||||||||| || ||| | | Sbjct 14207672 ATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14207613 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| || || || ||||| || || ||||| || ||||| Sbjct 14207612 GATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14207553 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || || || ||| ||||| | ||||| |||||| Sbjct 14207552 CAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAAC 14207493 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| || ||| | || || || Sbjct 14207492 ATCCAAAAAGAGTCAACCTTGCACTTGGT 14207464 Score = 132 bits (146), Expect = 4e-26 Identities = 691/1094 (63%), Gaps = 23/1094 (2%) Strand=Plus/Minus Query 128785 ACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTC 128844 || || |||| ||||| | || || || || ||||| | ||| |||||||| || || Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246 Query 128845 AAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTC 128904 | ||| |||||| | | | || || | || || | | || |||||| | Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186 Query 128905 aaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCA 128964 | | |||||| || || ||||||||||||||||| | || | ||| || ||||| Sbjct 27785185 ACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTT 27785126 Query 128965 ATCAAATT--TTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTG 129022 || | || ||| ||| ||||||||||| ||||| || | || | | | ||| | Sbjct 27785125 AT--AGTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 27785068 Query 129023 GTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTT 129082 | || |||||| || || | || ||| || |||| ||| ||||| | Sbjct 27785067 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 27785008 Query 129083 CGTTGTACAAATTCAGTTTGATCAAAT--CGTCGGTCAAGTATTTGTTTATTACTTGAAA 129140 | | |||||| |||| | |||| ||| | |||| | ||| | ||| ||||| Sbjct 27785007 CATCCCACAAATCAAGTTCAGTTAAATCACGTAG--TAAGTGGTGGTTCACTACCTGAAA 27784950 Query 129141 GTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATT 129200 || || | |||||| || | ||||||||| || | ||||| ||||| ||||| Sbjct 27784949 TTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATT 27784890 Query 129201 GTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCG 129260 ||||| |||||||| || || | || || |||||| ||| | | | || |||| Sbjct 27784889 ATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCT 27784830 Query 129261 CAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGTGT 129320 | |||||| || || |||||| | |||| ||||| | ||| |||| Sbjct 27784829 GACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGA 27784770 Query 129321 GTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATC 129380 | ||||||| || || ||||| || || || | |||||| || || | || Sbjct 27784769 TTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTC 27784710 Query 129381 GTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGT 129440 | || | | || ||||| || || |||||||| || ||| | || || || Sbjct 27784709 ATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGT 27784650 Query 129441 TTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA-CGCAAC 129498 ||| | || | || || || || | || | |||||||| || ||| |||| Sbjct 27784649 TTC-GAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGAATACCGCATT 27784592 Query 129499 ATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTG 129558 | |||| ||| || || ||||| | || | ||| || || || || | ||| Sbjct 27784591 AATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTT 27784532 Query 129559 GATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTG 129618 ||||||| || ||| || ||||| || || || || ||||| ||||| || || Sbjct 27784531 GATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTC 27784472 Query 129619 ACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA----CTCGCCTACATCGAT 129674 || ||||| ||||| | ||| | | ||| ||| | || || ||| | || Sbjct 27784471 GTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTC--- 27784415 Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734 ||||| ||| | || || |||||||| || || || |||| | | | Sbjct 27784414 ----ACAAACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGC 27784359 Query 129735 ACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 || || || ||||| | ||||| |||||| ||| || || || | || | ||| Sbjct 27784358 CGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTG 27784299 Query 129795 ATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || ||||| |||| |||| || || | | |||||| || || || || || ||||| Sbjct 27784298 GTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTG 27784239 Query 129855 CGTTTCGACAATGG 129868 | ||| | |||| Sbjct 27784238 AGATTCAATGATGG 27784225 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || ||||||||| | ||||| || || | ||| | || || || || Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || |||||||| ||||| || ||||| ||| Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 185487 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| ||||| | ||||| ||| Sbjct 185488 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 185547 Query 22396 AACATTCAAAAAGAATCCAC 22415 |||||||| || || ||||| Sbjct 185548 AACATTCAGAAGGAGTCCAC 185567 >seq3 Length=22052390 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || ||||||||||| || || || || |||| | || || || | Sbjct 1974942 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCT 1975001 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | || | |||| || |||||||| |||||||| |||||||| ||| Sbjct 1975002 TCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGAT 1975061 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| || | || ||| ||||||| | || || ||| Sbjct 1975062 CAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTAC 1975121 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || ||| | ||| | || | || |||| || ||| Sbjct 1975122 AATATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGT 1975172 Score = 118 bits (130), Expect = 9e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||| |||||||| || ||||| || ||||| || || |||||||| Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| |||||| | |||||||||||||||||||| || || ||| | ||| Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTT 22447 || || |||| |||| || |||| Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGGTT 1975461 >seq6 Length=26536676 Score = 113 bits (124), Expect = 4e-20 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || ||||| || || || || ||||| | || || || | Sbjct 9462452 AAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCC 9462393 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || ||| | || || | || || || |||||||||||||||||||| || || Sbjct 9462392 CTCGGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGA 9462333 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || || ||||| ||| | |||||| ||||| | ||||| || Sbjct 9462332 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTA 9462273 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | ||| | || | || |||| || || Sbjct 9462272 YAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 9462222 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || ||||| |||| | || || || || | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||||||||| || ||||| Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| ||||| | ||||| |||||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 9462040 ATCCAGAAGGAGTCTAC 9462024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711743147570