Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq4 91.5 3e-13
seq1 91.5 3e-13
seq328 89.7 1e-12
seq2 86.0 1e-11
>seq4
Length=23952536
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 863985 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 864044
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 864045 AGCCCCACGTTGGGC 864059
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 19006444 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 19006503
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 19006504 CCCACGTTGGGCGAAAGT 19006521
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 21774077 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 21774136
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 21774137 CCCCACGTTGGGC 21774149
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 22938377 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 22938318
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 22938317 CCCCACGTTGGGC 22938305
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 22952220 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22952161
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 22952160 CCCACGTTGGGC 22952149
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 22955039 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22954980
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 22954979 CCCACGTTGGGC 22954968
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 22955593 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22955652
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 22955653 CCCACGTTGGGC 22955664
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 22988063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22988122
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 22988123 CCCACGTTGGGC 22988134
>seq1
Length=29979347
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 25054308 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25054367
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 25054368 CCCACGTTGGGCGAAAGT 25054385
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3000088 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3000029
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3000028 CCCACGTTGGGC 3000017
>seq328
Length=5642
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 277 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 336
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 337 CCCCGCAAGGGA 348
>seq2
Length=27840087
Score = 86.0 bits (94), Expect = 1e-11
Identities = 324/500 (65%), Gaps = 24/500 (5%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573
||||| ||| || |||||| | || ||||| |||| || ||| | || || ||
Sbjct 27135364 GACTTTATCAACCTGGAGCTGGTACTGTTCTCCAATGCGG-ATAATG---AACGCTCCAT 27135309
Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633
||| || | ||||||||||| ||||| ||||||||| | | ||| | |||||
Sbjct 27135308 TCCTAGTCTAGTGGATGGCCTAAAGCCTGGTCAGCGTAAGGTGATGTTTACGTGCTTCAA 27135249
Query 218634 GCGGAACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAA 218689
||| ||| ||||| |||| || |||||| | || || | || ||||||
Sbjct 27135248 GCGTAACGA----CAAGAGGGAGGTTAAAGTTGCTCAGCTATCCGGGTCGGTGGCCGAAA 27135193
Query 218690 TTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGG 218749
| || | ||||||||||| ||| | |||||| | || ||| |||| |||
Sbjct 27135192 TGTCAGCATACCATCACGGCGAGATGTCCCTGCAGATGACTATAGTAAATTTGGCGCAGA 27135133
Query 218750 ACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809
| | ||| || ||||| || || |||||| || ||||||||| || | |||
Sbjct 27135132 ATTTTGTCGGATCGAACAATATCAATTTGCTGGAACCTCGCGGTCAGTTCGGCACACGTT 27135073
Query 218810 TATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGA 218869
| ||||| || ||| |||| || | || ||||| ||| | ||||||| | |
Sbjct 27135072 TGACCGGTGGTAAAGATTGTGCAAGCGCTCGTTACATCTTCACATTGATGTCGCCTCTTA 27135013
Query 218870 CGCGCCAGGTGT-TCAATCA--GGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATG 218926
| || | | | ||| || || ||| | |||| | |||||| | |||||| |
Sbjct 27135012 CACGACTCATATATCACCCATTGGATGATCCTTTGCTGC---AGTATCAGGTGGACGACG 27134956
Query 218927 GTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGT 218985
| | || ||||| ||| ||||||| | ||| |||||| | | | || |||||
Sbjct 27134955 G-CCAGCGCATTGAACCCTTGTGGTATATACCTATTATTCCAATGGTCTTGGTGAATGGC 27134897
Query 218986 GCCAATGGTATCGGGACAGG 219005
||| | || ||||| || ||
Sbjct 27134896 GCCGAGGGCATCGGCACCGG 27134877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027794948412698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |