Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 3e-13 seq1 91.5 3e-13 seq328 89.7 1e-12 seq2 86.0 1e-11 >seq4 Length=23952536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 863985 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 864044 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 864045 AGCCCCACGTTGGGC 864059 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 19006444 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 19006503 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 19006504 CCCACGTTGGGCGAAAGT 19006521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 21774077 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 21774136 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 21774137 CCCCACGTTGGGC 21774149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 22938377 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 22938318 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 22938317 CCCCACGTTGGGC 22938305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 22952220 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22952161 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 22952160 CCCACGTTGGGC 22952149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 22955039 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22954980 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 22954979 CCCACGTTGGGC 22954968 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 22955593 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22955652 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 22955653 CCCACGTTGGGC 22955664 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 22988063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22988122 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 22988123 CCCACGTTGGGC 22988134 >seq1 Length=29979347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 25054308 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25054367 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 25054368 CCCACGTTGGGCGAAAGT 25054385 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3000088 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3000029 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3000028 CCCACGTTGGGC 3000017 >seq328 Length=5642 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 277 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 336 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 337 CCCCGCAAGGGA 348 >seq2 Length=27840087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 324/500 (65%), Gaps = 24/500 (5%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| ||| || |||||| | || ||||| |||| || ||| | || || || Sbjct 27135364 GACTTTATCAACCTGGAGCTGGTACTGTTCTCCAATGCGG-ATAATG---AACGCTCCAT 27135309 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| || | ||||||||||| ||||| ||||||||| | | ||| | ||||| Sbjct 27135308 TCCTAGTCTAGTGGATGGCCTAAAGCCTGGTCAGCGTAAGGTGATGTTTACGTGCTTCAA 27135249 Query 218634 GCGGAACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAA 218689 ||| ||| ||||| |||| || |||||| | || || | || |||||| Sbjct 27135248 GCGTAACGA----CAAGAGGGAGGTTAAAGTTGCTCAGCTATCCGGGTCGGTGGCCGAAA 27135193 Query 218690 TTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGG 218749 | || | ||||||||||| ||| | |||||| | || ||| |||| ||| Sbjct 27135192 TGTCAGCATACCATCACGGCGAGATGTCCCTGCAGATGACTATAGTAAATTTGGCGCAGA 27135133 Query 218750 ACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 | | ||| || ||||| || || |||||| || ||||||||| || | ||| Sbjct 27135132 ATTTTGTCGGATCGAACAATATCAATTTGCTGGAACCTCGCGGTCAGTTCGGCACACGTT 27135073 Query 218810 TATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGA 218869 | ||||| || ||| |||| || | || ||||| ||| | ||||||| | | Sbjct 27135072 TGACCGGTGGTAAAGATTGTGCAAGCGCTCGTTACATCTTCACATTGATGTCGCCTCTTA 27135013 Query 218870 CGCGCCAGGTGT-TCAATCA--GGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATG 218926 | || | | | ||| || || ||| | |||| | |||||| | |||||| | Sbjct 27135012 CACGACTCATATATCACCCATTGGATGATCCTTTGCTGC---AGTATCAGGTGGACGACG 27134956 Query 218927 GTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGT 218985 | | || ||||| ||| ||||||| | ||| |||||| | | | || ||||| Sbjct 27134955 G-CCAGCGCATTGAACCCTTGTGGTATATACCTATTATTCCAATGGTCTTGGTGAATGGC 27134897 Query 218986 GCCAATGGTATCGGGACAGG 219005 ||| | || ||||| || || Sbjct 27134896 GCCGAGGGCATCGGCACCGG 27134877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027794948412698