Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 4e-36
seq2 161 2e-34
seq3 152 9e-32
>seq6
Length=26536676
Score = 167 bits (184), Expect = 4e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
||||||| || || || || || | |||||||| | || ||||| || |||||||| |
Sbjct 9461986 TTTAATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGT 9462045
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| ||||| || || | ||||| || | |||||| || ||||| || || | || || |
Sbjct 9462046 AGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGAT 9462105
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| || ||||| || ||||||||||| ||||| ||||| || ||| |||||||| | |
Sbjct 9462106 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGG 9462165
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||||||||||||||| || || | ||||||||||| ||||||||
Sbjct 9462166 GCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
Score = 141 bits (156), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || || ||||| || |||||||| || |||||
Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || || || || |||
Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| ||||| || || |||||||| | | || ||
Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACC 9462401
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| || || || | ||||||||||| ||||||||
Sbjct 9462402 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462448
>seq2
Length=27840087
Score = 161 bits (178), Expect = 2e-34
Identities = 175/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | |||||||| | || ||||||||||||||||| || |||||
Sbjct 14207446 CCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAA 14207505
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || ||||| || || || || || | || || || || |||
Sbjct 14207506 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGA 14207565
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| || ||||| || ||||| ||||||||| || | | ||| ||
Sbjct 14207566 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACC 14207625
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466
|| | |||||||| || ||||| ||||| || || || ||||||||| |||
Sbjct 14207626 TCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATTGTGC 14207677
Score = 150 bits (166), Expect = 3e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| | |||||||| || || ||||| || |||||
Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || |||||
Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || |||||||| ||||| |||||||| |||||||||||| | | || ||
Sbjct 185477 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 185418
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||| || ||||| || || ||||| || || ||||| || |||||| ||
Sbjct 185417 TCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTG 185367
>seq3
Length=22052390
Score = 152 bits (168), Expect = 9e-32
Identities = 174/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || || ||||| || ||||| || || || ||
Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| | ||||| |||||||| || || | || || || ||||||
Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| ||||||||| ||| ||||| || | | || ||
Sbjct 1975051 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1974992
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468
|||||||||||||| |||||||| | || || ||||| ||||||||| || ||
Sbjct 1974991 TCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTA 1974938
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| |||||||| || || | || || || || |||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 68355 ATGCCTTCCTTGTCTTGAATCTT 68377
|| ||||||||||| ||||||||
Sbjct 1975339 ATACCTTCCTTGTCCTGAATCTT 1975317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921585788550160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |