Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 >seq2 Length=27840087 Score = 109 bits (120), Expect = 5e-19 Identities = 407/629 (65%), Gaps = 12/629 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 || ||||||||||| || ||| |||| | | || || | | ||| | || ||| Sbjct 14040379 GGGAAGGGACGTGGTTCACGTTTCATCTGCTCCAGCAGGGGATTCACATGATTGTTATAG 14040438 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||| ||||| |||| || || | ||| || |||||| | | || || ||||| || Sbjct 14040439 ACGTGAGCATCGCCCAGTGTATGGACAAAATCGCCGGGTTTTAAGCCCGTCACATGGGCG 14040498 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| || || || | || ||| ||| ||||| ||||| ||||||| ||||||||| Sbjct 14040499 ATCATGTAGGTCAACAAGGCATACGAGGCGATGTTGAAAGGCACTCCCAGACCCATGTCG 14040558 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCAC----CGTCAGC--TACATAAAATTGA 20368 | | ||||||||| || ||||| | |||| || | || |||||| || || Sbjct 14040559 GCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAACTGC 14040618 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| | |||||| | | |||| || ||||| || || Sbjct 14040619 GCCAGGCAGTGGCACGGCGGCAACGCCATTTGGGGTATGTCCAAAGGATTCCAGGCGGAC 14040678 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || ||||| | | ||| |||||| || ||| ||| | | | || || Sbjct 14040679 ATTATGATGCGACGATCCGCCGGATTGTTGCGTATAGTATCGATGACCTGTTTCAGCTGA 14040738 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGC-ATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 |||| |||||||| || ||||| | | | | | | || || |||||||| | Sbjct 14040739 TCAATACCCTGGCCGGTGTAGTCGTCGGTGCATTTAC-CATATTTTGCGCCAAAGTGACG 14040797 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCC 20607 ||||||||| || || || || |||| ||| ||| || | | || |||| | Sbjct 14040798 CCACTGGAAGCCATATACCGGACCCAGATCACCCACCTCGCGATCCGTGTGGCCACATTT 14040857 Query 20608 GGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAAGCT 20666 | | || ||||| | || || ||| |||||||| | || | || || || | | | Sbjct 14040858 GTCGAGAAACTCGCGGGTGCTATTACCATCCCATATGTGTACATTCTTCTCCTGCAGGAT 14040917 Query 20667 CCCTGGAGTCAGTACTCCCCTTC-AGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAA 20725 | || | || || || ||| | | ||||| | |||||| | | ||||| || | Sbjct 14040918 CTTTGCA-TCTGT-CTGCCCAGCAATGAACCAGATCAGCTCCTCGGCCACGCCCCGAAAG 14040975 Query 20726 AACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 || || ||||| ||||| || ||||| || Sbjct 14040976 AAGACGCGCTTGGTGGTCAGCAAGGGGAA 14041004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441355266465520