Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq3 91.5 1e-13 >seq4 Length=23952536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 187/271 (69%), Gaps = 9/271 (3%) Strand=Plus/Plus Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890 ||||||| ||||||| |||| || | ||||| || || || || ||||| || Sbjct 633113 ACGATCT---GTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGT 633169 Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GC 37948 | |||||||||||||| ||| || ||||| || ||| | || | || | || | || Sbjct 633170 TTCTGCGCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGA-AACGC-CGGAACAGGC 633227 Query 37949 GCTCAACTACGCCAT-TTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACG 38007 ||| | || ||| |||| | || || |||||||| |||| || |||||||| || | Sbjct 633228 GCTTGAGTATAGCATATTAT-TGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATG 633286 Query 38008 GTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTC 38067 | ||||| || || ||||||| || | ||| | ||||| || ||| ||| Sbjct 633287 GCTACGTTGGTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCG 633346 Query 38068 CCATTTACGGCAAGATTCGGTACATGAACTA 38098 | || | || |||||||| || |||||||| Sbjct 633347 CGATATTTGGTAAGATTCGCTATATGAACTA 633377 >seq3 Length=22052390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | ||| ||||| |||| |||||| || |||||| |||||||||||||| | Sbjct 1975461 AACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGG 1975402 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||||||| || ||||| ||||||||||| Sbjct 1975401 ACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 1975347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || ||||||||| || ||||| || | Sbjct 1975172 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1975113 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| |||||||||||| || ||||| ||||||||||| Sbjct 1975112 CAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 1975059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047021028756