Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 138 3e-27 seq3 125 2e-23 seq6 122 2e-22 seq4 109 1e-18 >seq2 Length=27840087 Score = 138 bits (152), Expect = 3e-27 Identities = 150/198 (76%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || ||||||| || ||||| || ||||| ||||| || || || ||| Sbjct 14207482 TCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAG 14207541 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||| || ||||||||||| |||||||| || ||||| || Sbjct 14207542 ATTAGACGCTGCTG---ATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACA 14207598 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || ||| || || || ||||| ||||| || || || || || Sbjct 14207599 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTA 14207658 Query 288460 ACGAATATCTGCATTATG 288477 || || ||||||||| || Sbjct 14207659 ACAAAGATCTGCATTGTG 14207676 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || | || || || |||||| Sbjct 185561 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAG 185502 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| ||||||||| ||||| || ||||| || || || || || Sbjct 185501 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTC 185442 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | || || ||||| ||||| ||||| || ||| Sbjct 185441 TCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACG 185382 Query 288463 AATATCTGCATTATGT 288478 || || |||||| ||| Sbjct 185381 AAGATTTGCATTTTGT 185366 >seq3 Length=22052390 Score = 125 bits (138), Expect = 2e-23 Identities = 172/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || || || |||||||| ||||| | Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||| || || ||||||||||||||||| ||| ||| Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || ||||| || || | |||| | || || Sbjct 1975051 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1974992 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT-GTTATTCT 288484 || | ||||| ||||| || |||| ||| || ||||| ||||||||| | || ||||| Sbjct 1974991 TCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAATTCT 1974933 >seq6 Length=26536676 Score = 122 bits (134), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 9462218 CATG-CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGT 9462276 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||| || || | || || || ||||||||||||||||| || || Sbjct 9462277 CGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTG---AT 9462333 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || || ||||| || || || || ||||| || | || | Sbjct 9462334 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGG 9462393 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 9462394 GCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462448 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||| || || | || || || |||||| Sbjct 9462030 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 9462089 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || || ||||| || || || || Sbjct 9462090 ATCAGACGCTGCTG---ATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACA 9462146 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| || || || |||| ||||||| Sbjct 9462147 TTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTG 9462206 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 9462207 ACGAAGATCTGCAT 9462220 >seq4 Length=23952536 Score = 109 bits (120), Expect = 1e-18 Identities = 147/204 (72%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 269182 TATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAAT 269241 ||||| ||||| || || |||||| | || || ||||||| || ||| | |||||| Sbjct 3358307 TATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAAT 3358248 Query 269242 TCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTC 269301 |||||||||| ||| |||||||||| | || ||||| || || ||||| ||||||||| Sbjct 3358247 ACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTC 3358188 Query 269302 GAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT---AATGAATCCAGAAGACAATATT 269358 || || || |||| ||||||||| || || | ||||| ||||||| | Sbjct 3358187 GAGAAAAAAGTTGGCGAATATCAACGTATGGGCGTCACATCGAATCGGCTAGACAATGTC 3358128 Query 269359 TTTGCCATCGATGATGATTTTTAA 269382 ||| | | |||| ||||| ||| Sbjct 3358127 TTTACACTTGATGCGGATTTCTAA 3358104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179606366684684