Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 3e-27
seq3 125 2e-23
seq6 122 2e-22
seq4 109 1e-18
>seq2
Length=27840087
Score = 138 bits (152), Expect = 3e-27
Identities = 150/198 (76%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||||||||| || ||||||| || ||||| || ||||| ||||| || || || |||
Sbjct 14207482 TCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAG 14207541
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| || |||| || ||||||||||| |||||||| || ||||| ||
Sbjct 14207542 ATTAGACGCTGCTG---ATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACA 14207598
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || ||| || || || ||||| ||||| || || || || ||
Sbjct 14207599 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTA 14207658
Query 288460 ACGAATATCTGCATTATG 288477
|| || ||||||||| ||
Sbjct 14207659 ACAAAGATCTGCATTGTG 14207676
Score = 105 bits (116), Expect = 2e-17
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || | || || || ||||||
Sbjct 185561 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAG 185502
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| ||| ||||||||| ||||| || ||||| || || || || ||
Sbjct 185501 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTC 185442
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || || || | || || ||||| ||||| ||||| || |||
Sbjct 185441 TCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACG 185382
Query 288463 AATATCTGCATTATGT 288478
|| || |||||| |||
Sbjct 185381 AAGATTTGCATTTTGT 185366
>seq3
Length=22052390
Score = 125 bits (138), Expect = 2e-23
Identities = 172/239 (72%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||||| || || || |||||||| ||||| |
Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| | ||| || || ||||||||||||||||| ||| |||
Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || ||||| || || || || || ||||| || || | |||| | || ||
Sbjct 1975051 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1974992
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT-GTTATTCT 288484
|| | ||||| ||||| || |||| ||| || ||||| ||||||||| | || |||||
Sbjct 1974991 TCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAATTCT 1974933
>seq6
Length=26536676
Score = 122 bits (134), Expect = 2e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||||| || || || ||||| || ||||
Sbjct 9462218 CATG-CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGT 9462276
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || |||||||| || || | || || || ||||||||||||||||| || ||
Sbjct 9462277 CGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTG---AT 9462333
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || || || ||||| || || || || ||||| || | || |
Sbjct 9462334 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGG 9462393
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 9462394 GCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462448
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || |||||||| || || | || || || ||||||
Sbjct 9462030 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 9462089
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||||||| || || || || || ||||| || || || ||
Sbjct 9462090 ATCAGACGCTGCTG---ATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACA 9462146
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || | || || || | ||||| || || || |||| |||||||
Sbjct 9462147 TTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTG 9462206
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 9462207 ACGAAGATCTGCAT 9462220
>seq4
Length=23952536
Score = 109 bits (120), Expect = 1e-18
Identities = 147/204 (72%), Gaps = 3/204 (1%)
Strand=Plus/Minus
Query 269182 TATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAAT 269241
||||| ||||| || || |||||| | || || ||||||| || ||| | ||||||
Sbjct 3358307 TATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAAT 3358248
Query 269242 TCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTC 269301
|||||||||| ||| |||||||||| | || ||||| || || ||||| |||||||||
Sbjct 3358247 ACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTC 3358188
Query 269302 GAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT---AATGAATCCAGAAGACAATATT 269358
|| || || |||| ||||||||| || || | ||||| ||||||| |
Sbjct 3358187 GAGAAAAAAGTTGGCGAATATCAACGTATGGGCGTCACATCGAATCGGCTAGACAATGTC 3358128
Query 269359 TTTGCCATCGATGATGATTTTTAA 269382
||| | | |||| ||||| |||
Sbjct 3358127 TTTACACTTGATGCGGATTTCTAA 3358104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179606366684684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |