Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-13 seq4 84.2 3e-11 >seq2 Length=27840087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 171880 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 171937 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 27135029 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTCAAACGTGTGCCGAAC 27135086 Query 171938 TGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 171997 ||||| | ||||| || | |||||||||||| || || | | | | ||||| || Sbjct 27135087 TGACCGCGAGGTTCCAGCAAATTGATATTGTTCGATCCGACAAAATTCTGCGCCAAATTT 27135146 Query 171998 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATA 172056 || || || ||| || ||||| | || ||||||||||| || ||| | || || || | Sbjct 27135147 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCGGCCACCGA 27135205 Query 172057 CGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 172116 | | | | ||| || || || | ||| |||| ||| | |||||||| | |||| Sbjct 27135206 CCCGGATAGCTGAGCAACTTTAACCTCCCTCTTGTCGTTACGCTTGAAGCACGTAAACAT 27135265 Query 172117 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 ||||| | ||| |||||| ||||| || Sbjct 27135266 CACCTTACGCTGACCAGGCTTTAGGCCATC 27135295 >seq4 Length=23952536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| | ||||| |||||| ||| || ||||| ||||| || ||| Sbjct 3358474 CCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGTTTC 3358533 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| ||| || |||| ||| || ||||||||||||||||| |||||| Sbjct 3358534 TTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCGAAC 3358593 Query 126185 GCAAAGAGACGCTCAGCAAAG 126205 |||| || | ||| ||||| Sbjct 3358594 GCAATGATTCTCTCGCCAAAG 3358614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597329870128240