Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 2e-13
seq4 84.2 3e-11
>seq2
Length=27840087
Score = 91.5 bits (100), Expect = 2e-13
Identities = 186/270 (69%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 171880 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 171937
|||||||||||| | || ||| || |||||| ||||| | | ||| || || ||
Sbjct 27135029 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTCAAACGTGTGCCGAAC 27135086
Query 171938 TGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 171997
||||| | ||||| || | |||||||||||| || || | | | | ||||| ||
Sbjct 27135087 TGACCGCGAGGTTCCAGCAAATTGATATTGTTCGATCCGACAAAATTCTGCGCCAAATTT 27135146
Query 171998 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATA 172056
|| || || ||| || ||||| | || ||||||||||| || ||| | || || || |
Sbjct 27135147 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCGGCCACCGA 27135205
Query 172057 CGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 172116
| | | | ||| || || || | ||| |||| ||| | |||||||| | ||||
Sbjct 27135206 CCCGGATAGCTGAGCAACTTTAACCTCCCTCTTGTCGTTACGCTTGAAGCACGTAAACAT 27135265
Query 172117 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146
||||| | ||| |||||| ||||| ||
Sbjct 27135266 CACCTTACGCTGACCAGGCTTTAGGCCATC 27135295
>seq4
Length=23952536
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124
|||||||| || ||||| | ||||| |||||| ||| || ||||| ||||| || |||
Sbjct 3358474 CCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGTTTC 3358533
Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184
|||| ||| || |||| ||| || ||||||||||||||||| ||||||
Sbjct 3358534 TTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCGAAC 3358593
Query 126185 GCAAAGAGACGCTCAGCAAAG 126205
|||| || | ||| |||||
Sbjct 3358594 GCAATGATTCTCTCGCCAAAG 3358614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597329870128240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |