Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 2e-18
seq6 98.7 1e-15
seq4 87.8 2e-12
seq374 82.4 8e-11
>seq2
Length=27840087
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| ||||| ||| |||||| ||||| ||||| || | |||||| || |
Sbjct 185586 ACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCC 185527
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || ||||| || || |||||||| || | ||| | | ||| ||
Sbjct 185526 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTT 185467
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || |||| || | | ||||| | || || || | || ||
Sbjct 185466 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAAT 185407
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
||| ||||| || || || || || ||||||||||||||
Sbjct 185406 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 23242428 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 23242369
Query 57064 CTATACTACCGAGGAT 57079
|||||||| |||||||
Sbjct 23242368 CTATACTATCGAGGAT 23242353
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|| || |||||| || | | ||| |||||| ||||||||||||||||||||| |||||
Sbjct 23252279 AACATATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 23252220
Query 57059 CACCACTATACTACCGAGGA 57078
|||||||||||| ||||||
Sbjct 23252219 AACCACTATACTATCGAGGA 23252200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 23252567 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 23252626
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 23252627 ACTATACTATCGAGGA 23252642
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23242652 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23242711
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 23242712 ATACTATCGAGGA 23242724
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23496546 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23496605
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 23496606 ATACTATCGAGGA 23496618
>seq6
Length=26536676
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| || | || ||| | |||||| ||||| || |||||| || || ||||| || | |
Sbjct 9461994 CCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 9462053
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || |||||||| |||||||| || || |||||||| || | ||
Sbjct 9462054 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462113
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | ||||||||| ||| || || | || | | ||||| | || ||
Sbjct 9462114 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACC 9462173
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||||||||| || | ||||| || ||||| |||||
Sbjct 9462174 TCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
>seq4
Length=23952536
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 18949504 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 18949445
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||||||
Sbjct 18949444 ATACTATCGAGGATTG 18949429
>seq374
Length=6165
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 490 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 431
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 430 TACTATCGAGGAT 418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543191220871520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |