Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq3 122 9e-23 seq6 105 7e-18 >seq2 Length=27840087 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | ||||| | || || |||||||||||| Sbjct 185567 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCG 185508 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || ||||| ||||| ||||| || || ||| Sbjct 185507 GCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTG 185448 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| || || || || | ||| | |||||||||||| | |||| Sbjct 185447 ACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTT 185388 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 185387 TTAACGAAGATTTGCATTTT 185368 Score = 125 bits (138), Expect = 7e-24 Identities = 522/818 (64%), Gaps = 8/818 (1%) Strand=Plus/Minus Query 153690 ATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTC 153749 || |||| || || ||||| || || | ||||||||||||||| || | ||| |||| Sbjct 27785293 ATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTC 27785234 Query 153750 CAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTA 153809 || | | | || | |||||| | || |||| | |||| | | || Sbjct 27785233 CATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTG 27785174 Query 153810 AACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT---T 153866 || ||||| || ||||| || || || || | ||| |||||||| | || |||| | Sbjct 27785173 AAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTAT--AGTTGATT 27785116 Query 153867 TTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCA 153926 | |||| ||||||||||||||||| || | | ||| || | || || ||| Sbjct 27785115 TGACTGAA-ATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCA 27785057 Query 153927 ATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAA 153986 || || || | || | | ||| || ||| ||| | ||| || ||||| Sbjct 27785056 ATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAA 27784997 Query 153987 TTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAAT 154046 | ||| | |||||| | ||||| ||||| | ||| ||||| ||||| | ||| Sbjct 27784996 TCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAA 27784937 Query 154047 ACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATT 154106 || || | || | || || | ||||||||||| || || ||||| |||||| Sbjct 27784936 ACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATT 27784877 Query 154107 TGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTT 154166 || || || | |||||| ||||| || | | ||||| |||| | |||||||| Sbjct 27784876 TGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGC 27784817 Query 154167 GCAATGCGCAATTTTAA-ATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACAT 154225 || || | |||||| | | ||||| ||| | | || ||| |||||||| Sbjct 27784816 GCTAT-AGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACAT 27784758 Query 154226 GTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTT 154285 || || ||||||| || || | |||||| || |||| | || || || | Sbjct 27784757 ATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATC 27784698 Query 154286 CAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTG 154345 | || || || || |||||||| || || ||||||||| |||||| ||| || Sbjct 27784697 TCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTG 27784638 Query 154346 TTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATC 154405 | ||||| | |||| ||||||||| | | | || || || || || Sbjct 27784637 CTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTC 27784578 Query 154406 GGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGC 154465 || | |||||| | || | |||| || | ||| |||||| |||| ||| || | Sbjct 27784577 CGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTC 27784518 Query 154466 CTCCAGAGGATAATAATTGATATCGATAATTTTATTTA 154503 || ||| || ||||| ||||| || |||||||||| Sbjct 27784517 TGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTA 27784480 Score = 107 bits (118), Expect = 2e-18 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||| |||||||| || | | ||||| | ||||| | |||||||| Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||| || ||||||||||||||||| || || | | || ||||| Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGA-TCTTGGCTTT 14207594 Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||| ||| | |||| ||| || || || || | ||| | |||||| || || | Sbjct 14207595 GACATTCTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGG 14207652 Query 64424 GTTTTTACGAAAATTTGCATT 64444 ||||| || || || |||||| Sbjct 14207653 GTTTTAACAAAGATCTGCATT 14207673 >seq3 Length=22052390 Score = 122 bits (134), Expect = 9e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||||| ||||| || || || || ||||| || | Sbjct 1975172 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1975113 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| || ||||||||||| | || || |||||||| || || || Sbjct 1975112 CAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGG 1975053 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || ||||| || || ||| || ||| | ||||| | || || Sbjct 1975052 AATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1974993 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 || | || | |||||| || ||||||||||| ||||| || |||||||| |||| Sbjct 1974992 CTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAAT 1974936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || | ||||| || || || ||||||||||||||||| | Sbjct 1975460 ACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGA 1975401 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| || ||||||||||| | || || |||||||| || || || Sbjct 1975400 CAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1975341 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| || || || || || Sbjct 1975340 AATACCTTCCTTGTCCTGAATCTT 1975317 >seq6 Length=26536676 Score = 105 bits (116), Expect = 7e-18 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || ||||| || || | | ||||| | || Sbjct 9462237 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCC 9462296 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||| || || ||||| || || || ||| Sbjct 9462297 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462356 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | ||| | |||| Sbjct 9462357 TGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTC 9462416 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||||||| || ||||| || ||||| || Sbjct 9462417 TTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | || || ||||||||||| Sbjct 9462024 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCA 9462083 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || ||||| || || || ||||| || || ||| Sbjct 9462084 GCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTA 9462143 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || || || || || | || | ||| ||||| |||||||| Sbjct 9462144 ACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTC 9462203 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 9462204 TTGACGAAGATCTGCAT 9462220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624951610320