Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 2e-24
seq3 122 9e-23
seq6 105 7e-18
>seq2
Length=27840087
Score = 127 bits (140), Expect = 2e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || ||||||||||| || | | ||||| | || || ||||||||||||
Sbjct 185567 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCG 185508
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || |||||||| || || || ||||| ||||| ||||| || || |||
Sbjct 185507 GCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTG 185448
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || ||| || || || || | ||| | |||||||||||| | ||||
Sbjct 185447 ACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTT 185388
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| ||||| |||||||||||
Sbjct 185387 TTAACGAAGATTTGCATTTT 185368
Score = 125 bits (138), Expect = 7e-24
Identities = 522/818 (64%), Gaps = 8/818 (1%)
Strand=Plus/Minus
Query 153690 ATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTC 153749
|| |||| || || ||||| || || | ||||||||||||||| || | ||| ||||
Sbjct 27785293 ATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTC 27785234
Query 153750 CAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTA 153809
|| | | | || | |||||| | || |||| | |||| | | ||
Sbjct 27785233 CATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTG 27785174
Query 153810 AACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT---T 153866
|| ||||| || ||||| || || || || | ||| |||||||| | || |||| |
Sbjct 27785173 AAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTAT--AGTTGATT 27785116
Query 153867 TTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCA 153926
| |||| ||||||||||||||||| || | | ||| || | || || |||
Sbjct 27785115 TGACTGAA-ATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCA 27785057
Query 153927 ATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAA 153986
|| || || | || | | ||| || ||| ||| | ||| || |||||
Sbjct 27785056 ATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAA 27784997
Query 153987 TTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAAT 154046
| ||| | |||||| | ||||| ||||| | ||| ||||| ||||| | |||
Sbjct 27784996 TCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAA 27784937
Query 154047 ACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATT 154106
|| || | || | || || | ||||||||||| || || ||||| ||||||
Sbjct 27784936 ACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATT 27784877
Query 154107 TGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTT 154166
|| || || | |||||| ||||| || | | ||||| |||| | ||||||||
Sbjct 27784876 TGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGC 27784817
Query 154167 GCAATGCGCAATTTTAA-ATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACAT 154225
|| || | |||||| | | ||||| ||| | | || ||| ||||||||
Sbjct 27784816 GCTAT-AGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACAT 27784758
Query 154226 GTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTT 154285
|| || ||||||| || || | |||||| || |||| | || || || |
Sbjct 27784757 ATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATC 27784698
Query 154286 CAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTG 154345
| || || || || |||||||| || || ||||||||| |||||| ||| ||
Sbjct 27784697 TCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTG 27784638
Query 154346 TTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATC 154405
| ||||| | |||| ||||||||| | | | || || || || ||
Sbjct 27784637 CTGATTTAATAAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTC 27784578
Query 154406 GGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGC 154465
|| | |||||| | || | |||| || | ||| |||||| |||| ||| || |
Sbjct 27784577 CGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTC 27784518
Query 154466 CTCCAGAGGATAATAATTGATATCGATAATTTTATTTA 154503
|| ||| || ||||| ||||| || ||||||||||
Sbjct 27784517 TGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTA 27784480
Score = 107 bits (118), Expect = 2e-18
Identities = 147/201 (73%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || |||||||| |||||||| || | | ||||| | ||||| | ||||||||
Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || |||||||| || ||||||||||||||||| || || | | || |||||
Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGA-TCTTGGCTTT 14207594
Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
||| ||| | |||| ||| || || || || | ||| | |||||| || || |
Sbjct 14207595 GACATTCTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGG 14207652
Query 64424 GTTTTTACGAAAATTTGCATT 64444
||||| || || || ||||||
Sbjct 14207653 GTTTTAACAAAGATCTGCATT 14207673
>seq3
Length=22052390
Score = 122 bits (134), Expect = 9e-23
Identities = 169/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || ||||||| ||||| || || || || ||||| || |
Sbjct 1975172 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1975113
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | ||||| || ||||||||||| | || || |||||||| || || ||
Sbjct 1975112 CAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGG 1975053
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||| || || ||||| || || ||| || ||| | ||||| | || ||
Sbjct 1975052 AATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1974993
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452
|| | || | |||||| || ||||||||||| ||||| || |||||||| ||||
Sbjct 1974992 CTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAAT 1974936
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | || || | ||||| || || || ||||||||||||||||| |
Sbjct 1975460 ACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGA 1975401
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | ||||| || ||||||||||| | || || |||||||| || || ||
Sbjct 1975400 CAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1975341
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
||| ||||| || || || || ||
Sbjct 1975340 AATACCTTCCTTGTCCTGAATCTT 1975317
>seq6
Length=26536676
Score = 105 bits (116), Expect = 7e-18
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||||| || || || ||||| || || | | ||||| | ||
Sbjct 9462237 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCC 9462296
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || || |||||||| || || ||||| || || || |||
Sbjct 9462297 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462356
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || || || || || | ||| | ||||
Sbjct 9462357 TGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTC 9462416
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| |||||||| || ||||| || ||||| ||
Sbjct 9462417 TTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | | ||||| | || || |||||||||||
Sbjct 9462024 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCA 9462083
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || |||||||| || || ||||| || || || ||||| || || |||
Sbjct 9462084 GCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTA 9462143
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || || || || || || | || | ||| ||||| ||||||||
Sbjct 9462144 ACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTC 9462203
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 9462204 TTGACGAAGATCTGCAT 9462220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499624951610320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |