Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq4 102 8e-17 seq3 93.3 4e-14 seq6 91.5 1e-13 >seq2 Length=27840087 Score = 104 bits (114), Expect = 2e-17 Identities = 504/785 (64%), Gaps = 24/785 (3%) Strand=Plus/Minus Query 152993 CACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGC 153052 || |||||||| ||| | || | |||| ||||| || || ||||| ||||| | Sbjct 27784995 CAAGTTCAGTTAAATCACGTAGT-----AAGTGGTGGTTCACTACCTGAAATTCGCCAGA 27784941 Query 153053 CAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAG 153112 ||| |||||||| || | || ||| |||| || || || || |||||||| | Sbjct 27784940 CAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAA 27784881 Query 153113 TATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTG 153172 |||||| || |||| ||| || |||||| || | | |||||||| | | ||||| Sbjct 27784880 TATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTG 27784821 Query 153173 ---CGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTT 153229 |||| || | || | || | ||||||||| || | | |||| || Sbjct 27784820 TTGCGCT---ATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTT 27784764 Query 153230 CCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCT 153289 |||||| || ||||| || | |||| || | |||||||| || | || || Sbjct 27784763 CCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGG 27784704 Query 153290 GCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGC 153349 || || | || || | ||| ||||| || || | || ||||||||||| |||||| Sbjct 27784703 TCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAA 27784644 Query 153350 GATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCAT-GCGCAGCAGCACAA 153408 || || | ||| | | ||||| || ||||| || || |||| | | | Sbjct 27784643 AATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGAATACCGCATTAATATTA 27784585 Query 153409 AGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATG-CTTCTCGTTGCTGCGC 153467 | ||||| || | || |||| || | || || || || || | | ||| | Sbjct 27784584 ATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGAT-TTT 27784526 Query 153468 CTCGC-GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCAC 153526 | || || || | ||| |||| ||| ||| || ||||| || | ||| | || Sbjct 27784525 TTAGCTTCTGGCAAAGGG-TAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467 Query 153527 CACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGC 153585 | |||||||| | ||||| || | || ||||| | ||||| || |||| || Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAG--ATTTC-TC-CTGCGTCACAA 27784411 Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644 | ||| | || |||||||||| |||||| || || | || || || | || || Sbjct 27784410 ACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCG-AATAT 27784352 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704 | || || || | ||| || || ||||||||||| || | |||||| || |||||| Sbjct 27784351 TCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTT 27784292 Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCG 153764 || | || || | ||| || || | |||||| || || ||||| ||||| | ||| Sbjct 27784291 TTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCA 27784232 Query 153765 ACGAT 153769 | ||| Sbjct 27784231 ATGAT 27784227 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || || || | | ||||||| ||||| |||||||||||| | ||| || || || Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| || || | | ||||||||||||| || || ||||| || ||||||||||| | Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | || | ||| || | || || ||||| | || | || ||| Sbjct 14207584 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14207643 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| ||||| |||||||| Sbjct 14207644 CCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | |||||||| ||||||||||||||| Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||| || || || |||| |||| |||||||| || || || || Sbjct 185538 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGG 185479 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| || || | | || | |||||| | | ||| || Sbjct 185478 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 185419 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || |||||||| || || || ||||| Sbjct 185418 CTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371 >seq4 Length=23952536 Score = 102 bits (112), Expect = 8e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTG 52693 |||||| | || | || ||||| ||| | || | |||||||| | ||| | |||| Sbjct 3358370 GAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGCATGAATTGTGCATTG-ATGTC 3358312 Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTACT 52752 |||||| || || ||||| |||||||||||||||||| | ||||| | | |||| | || Sbjct 3358311 CGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAAT-CT 3358253 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 ||| | ||||| || |||||| | | || ||||| || |||||||| |||| Sbjct 3358252 ACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACT 3358193 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844 | |||||||| ||| ||||| ||| | ||| Sbjct 3358192 TCTTCGAGAAAAAAGTTGGCGAATATCAACGT 3358161 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || ||||| | | | |||||||||||||||||||| ||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || |||| |||| |||||||| || || || || Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 138508 ATACCTTCTTTGTC 138521 |||||||| ||||| Sbjct 1975339 ATACCTTCCTTGTC 1975326 >seq6 Length=26536676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||| || || || || | Sbjct 9462027 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCG 9462086 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || ||||| ||| || || | Sbjct 9462087 AAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACA 9462146 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | ||||| ||||||| ||| || Sbjct 9462147 TTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTG 9462206 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 9462207 ACGAAGATCTGCATG 9462221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242685976160