Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
seq4 102 8e-17
seq3 93.3 4e-14
seq6 91.5 1e-13
>seq2
Length=27840087
Score = 104 bits (114), Expect = 2e-17
Identities = 504/785 (64%), Gaps = 24/785 (3%)
Strand=Plus/Minus
Query 152993 CACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGC 153052
|| |||||||| ||| | || | |||| ||||| || || ||||| ||||| |
Sbjct 27784995 CAAGTTCAGTTAAATCACGTAGT-----AAGTGGTGGTTCACTACCTGAAATTCGCCAGA 27784941
Query 153053 CAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAG 153112
||| |||||||| || | || ||| |||| || || || || |||||||| |
Sbjct 27784940 CAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAA 27784881
Query 153113 TATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTG 153172
|||||| || |||| ||| || |||||| || | | |||||||| | | |||||
Sbjct 27784880 TATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTG 27784821
Query 153173 ---CGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTT 153229
|||| || | || | || | ||||||||| || | | |||| ||
Sbjct 27784820 TTGCGCT---ATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTT 27784764
Query 153230 CCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCT 153289
|||||| || ||||| || | |||| || | |||||||| || | || ||
Sbjct 27784763 CCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGG 27784704
Query 153290 GCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGC 153349
|| || | || || | ||| ||||| || || | || ||||||||||| ||||||
Sbjct 27784703 TCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAA 27784644
Query 153350 GATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCAT-GCGCAGCAGCACAA 153408
|| || | ||| | | ||||| || ||||| || || |||| | | |
Sbjct 27784643 AATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGAATACCGCATTAATATTA 27784585
Query 153409 AGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATG-CTTCTCGTTGCTGCGC 153467
| ||||| || | || |||| || | || || || || || | | ||| |
Sbjct 27784584 ATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGAT-TTT 27784526
Query 153468 CTCGC-GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCAC 153526
| || || || | ||| |||| ||| ||| || ||||| || | ||| | ||
Sbjct 27784525 TTAGCTTCTGGCAAAGGG-TAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 27784467
Query 153527 CACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGC 153585
| |||||||| | ||||| || | || ||||| | ||||| || |||| ||
Sbjct 27784466 GATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAG--ATTTC-TC-CTGCGTCACAA 27784411
Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644
| ||| | || |||||||||| |||||| || || | || || || | || ||
Sbjct 27784410 ACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCG-AATAT 27784352
Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704
| || || || | ||| || || ||||||||||| || | |||||| || ||||||
Sbjct 27784351 TCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTT 27784292
Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCG 153764
|| | || || | ||| || || | |||||| || || ||||| ||||| | |||
Sbjct 27784291 TTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCA 27784232
Query 153765 ACGAT 153769
| |||
Sbjct 27784231 ATGAT 27784227
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|| || || | | ||||||| ||||| |||||||||||| | ||| || || ||
Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
| ||| || || | | ||||||||||||| || || ||||| || ||||||||||| |
Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583
Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585
|| || ||| | | || | ||| || | || || ||||| | || | || |||
Sbjct 14207584 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14207643
Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || ||||| ||||| ||||||||
Sbjct 14207644 CCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || || || | | |||||||| |||||||||||||||
Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||||| || || || |||| |||| |||||||| || || || ||
Sbjct 185538 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGG 185479
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || |||||||| ||| || || | | || | |||||| | | ||| ||
Sbjct 185478 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 185419
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || |||||||| || || || |||||
Sbjct 185418 CTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371
>seq4
Length=23952536
Score = 102 bits (112), Expect = 8e-17
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTG 52693
|||||| | || | || ||||| ||| | || | |||||||| | ||| | ||||
Sbjct 3358370 GAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGCATGAATTGTGCATTG-ATGTC 3358312
Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTACT 52752
|||||| || || ||||| |||||||||||||||||| | ||||| | | |||| | ||
Sbjct 3358311 CGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAAT-CT 3358253
Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812
||| | ||||| || |||||| | | || ||||| || |||||||| ||||
Sbjct 3358252 ACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACT 3358193
Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844
| |||||||| ||| ||||| ||| | |||
Sbjct 3358192 TCTTCGAGAAAAAAGTTGGCGAATATCAACGT 3358161
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||||| || ||||| | | | |||||||||||||||||||| ||| |
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || ||||| || |||| |||| |||||||| || || || ||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 138508 ATACCTTCTTTGTC 138521
|||||||| |||||
Sbjct 1975339 ATACCTTCCTTGTC 1975326
>seq6
Length=26536676
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||| || || || || |
Sbjct 9462027 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCG 9462086
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| || || || || ||||| || ||||| ||| || || |
Sbjct 9462087 AAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACA 9462146
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||| ||||| | || | ||||| ||||||| ||| ||
Sbjct 9462147 TTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTG 9462206
Query 138601 ACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 9462207 ACGAAGATCTGCATG 9462221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496242685976160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |