Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 1e-12 >seq4 Length=23952536 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 69534 GGTTATGTGTTTTTCTTTTACCGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAGACC 69593 |||| |||| | ||||| | ||| ||| || || | ||| | || |||| || ||| | Sbjct 16397391 GGTT-TGTGCTGTTCTTCTTCCGTGAACTGTCCATGGAGTACATGAACTTTGGCAAGGCG 16397333 Query 69594 ATTTATTCGAGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCC--ACA-TCGGTAC 69650 | ||||| | || | ||| |||||||| || |||| ||| || || ||| || | Sbjct 16397332 GTCTATTCCCGGGTGGGTCGCGTCTGCAAGAACGATCGCGGTGGACCCTACAATC---AT 16397276 Query 69651 TCGGATAAATGGACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAATTC 69710 | | | ||||||||||| || || || ||||| || || |||||||| ||||| || Sbjct 16397275 GCCAAGAGCTGGACGTCATTCTTGAAAACACGACTCAACTGCTCGGTGCCGGGCGAGTTT 16397216 Query 69711 CCCTTTTACTTTGACGA 69727 || || |||||||| || Sbjct 16397215 CCATTCTACTTTGATGA 16397199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408227387975408