Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 1e-32
seq3 84.2 2e-11
>seq2
Length=27840087
Score = 154 bits (170), Expect = 1e-32
Identities = 478/735 (65%), Gaps = 11/735 (1%)
Strand=Plus/Plus
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
|| || ||| | ||||| || || || || || |||||| | | || ||| | || |||
Sbjct 27784227 ATCATTGAATCTCAAGTAGAGACTGGTACTCCTTACATGTTATTTAAGGACTCTTGTAAC 27784286
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
|| |||| ||| || || | ||||| |||||||| |||||||| ||| | |||||
Sbjct 27784287 AGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATA 27784346
Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAAT 123767
| ||||| | | ||| || | || |||||||||||||| || || | |||
Sbjct 27784347 GTTGAATATTCGGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCTATCGCACTTAAT 27784406
Query 123768 CG--TTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821
||| | || | || | ||| | | || ||| ||| ||| |||| |||
Sbjct 27784407 ATGTTTGTGACGCA---GGAGAAATCTTATGACTTTAAAAAGCTTAAAGAAGTAACTAAA 27784463
Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881
| || || || || || ||||| || ||| | |||| || |||||| |||||
Sbjct 27784464 ATCGTTACGAAAAACTTAAATAAAATAATTGATATAAATTACTACCCTTTGCCAGAAGCT 27784523
Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941
|| ||||| ||| | || | || | || | |||||||| || |||||
Sbjct 27784524 AAAAAATCAAATTTACGTCACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGGACGCA 27784583
Query 123942 TTTGTAATGCTGCGC-ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAAT 124000
|| || | |||| || || |||||||| |||||| || | ||| ||| ||
Sbjct 27784584 TTAATATTAATGCGGTATTCC-TACGAAAGTCGTGAAGCATTTTTATTAAATCAGCAGAT 27784642
Query 124001 AGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGG 124060
|||||| || || || || |||||||| || ||||| ||| | || | | | ||
Sbjct 27784643 TTTCGAAACTATATACTATGGAGCTTTGGAAGCCAGCTGTGAATTAGCTCAGAGAGATGG 27784702
Query 124061 CGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTG 124120
| || || | ||| | ||||| || | ||| ||| ||||||||||| || |||||
Sbjct 27784703 ACCATATGAGACTTATGTTGGCAGTCCAGTAAGCAAAGGAATTTTGCAGTATGATATGTG 27784762
Query 124121 GAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCA 124180
||| |||| ||| || | ||||| |||| | | | ||| || ||| || ||
Sbjct 27784763 GAAAAAATCACCAACAGATCTTTGGGATTGGAATGCTCTTAAAAAATCTATAGCGCAACA 27784822
Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240
|||| | | || || | | | || |||||| || ||| ||||||| ||||| ||
Sbjct 27784823 CGGTGTCAGAAATTCTTTACTCATCGCTCCCATGCCTACAGCATCCACTGCGCAAATATT 27784882
Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300
|| || || || || |||||||| | ||| || | ||| ||||||| || |
Sbjct 27784883 GGGCAATAATGAGTCGTTCGAGCCTTATACTTCAAACATTTACACAAGACGAGTTTTGTC 27784942
Query 124301 CGGCGATTTTCAAGT 124315
||||| ||||| ||
Sbjct 27784943 TGGCGAATTTCAGGT 27784957
>seq3
Length=22052390
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||| |||||||| || || | ||| ||| |||
Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| || || ||| | |||| || ||||| || || ||||| || || |||||||||
Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGA 1975034
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || |||| || | || | ||| ||||||| ||| || || | || | || ||
Sbjct 1975033 ATCTTGGCCTTGA-CGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTT 1974975
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | |||||| || || || |||||
Sbjct 1974974 TCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451985244172880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |