Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq3 84.2 2e-11 >seq2 Length=27840087 Score = 154 bits (170), Expect = 1e-32 Identities = 478/735 (65%), Gaps = 11/735 (1%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | ||||| || || || || || |||||| | | || ||| | || ||| Sbjct 27784227 ATCATTGAATCTCAAGTAGAGACTGGTACTCCTTACATGTTATTTAAGGACTCTTGTAAC 27784286 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || |||| ||| || || | ||||| |||||||| |||||||| ||| | ||||| Sbjct 27784287 AGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATA 27784346 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAAT 123767 | ||||| | | ||| || | || |||||||||||||| || || | ||| Sbjct 27784347 GTTGAATATTCGGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCTATCGCACTTAAT 27784406 Query 123768 CG--TTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 ||| | || | || | ||| | | || ||| ||| ||| |||| ||| Sbjct 27784407 ATGTTTGTGACGCA---GGAGAAATCTTATGACTTTAAAAAGCTTAAAGAAGTAACTAAA 27784463 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881 | || || || || || ||||| || ||| | |||| || |||||| ||||| Sbjct 27784464 ATCGTTACGAAAAACTTAAATAAAATAATTGATATAAATTACTACCCTTTGCCAGAAGCT 27784523 Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941 || ||||| ||| | || | || | || | |||||||| || ||||| Sbjct 27784524 AAAAAATCAAATTTACGTCACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGGACGCA 27784583 Query 123942 TTTGTAATGCTGCGC-ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAAT 124000 || || | |||| || || |||||||| |||||| || | ||| ||| || Sbjct 27784584 TTAATATTAATGCGGTATTCC-TACGAAAGTCGTGAAGCATTTTTATTAAATCAGCAGAT 27784642 Query 124001 AGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGG 124060 |||||| || || || || |||||||| || ||||| ||| | || | | | || Sbjct 27784643 TTTCGAAACTATATACTATGGAGCTTTGGAAGCCAGCTGTGAATTAGCTCAGAGAGATGG 27784702 Query 124061 CGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTG 124120 | || || | ||| | ||||| || | ||| ||| ||||||||||| || ||||| Sbjct 27784703 ACCATATGAGACTTATGTTGGCAGTCCAGTAAGCAAAGGAATTTTGCAGTATGATATGTG 27784762 Query 124121 GAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCA 124180 ||| |||| ||| || | ||||| |||| | | | ||| || ||| || || Sbjct 27784763 GAAAAAATCACCAACAGATCTTTGGGATTGGAATGCTCTTAAAAAATCTATAGCGCAACA 27784822 Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240 |||| | | || || | | | || |||||| || ||| ||||||| ||||| || Sbjct 27784823 CGGTGTCAGAAATTCTTTACTCATCGCTCCCATGCCTACAGCATCCACTGCGCAAATATT 27784882 Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300 || || || || || |||||||| | ||| || | ||| ||||||| || | Sbjct 27784883 GGGCAATAATGAGTCGTTCGAGCCTTATACTTCAAACATTTACACAAGACGAGTTTTGTC 27784942 Query 124301 CGGCGATTTTCAAGT 124315 ||||| ||||| || Sbjct 27784943 TGGCGAATTTCAGGT 27784957 >seq3 Length=22052390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| |||||||| || || | ||| ||| ||| Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | |||| || ||||| || || ||||| || || ||||||||| Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGA 1975034 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||| ||||||| ||| || || | || | || || Sbjct 1975033 ATCTTGGCCTTGA-CGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTT 1974975 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||||| || || || ||||| Sbjct 1974974 TCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451985244172880