Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=27840087 Score = 100 bits (110), Expect = 3e-16 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 175900 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 27135029 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTCAAACGTGTGCCGAAC 27135086 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||| | || || || | |||||||||||| || || | | | | | |||||| || Sbjct 27135087 TGACCGCGAGGTTCCAGCAAATTGATATTGTTCGATCCGACAAAATTCTGCGCCAAATTT 27135146 Query 176018 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 || || || ||| || ||||| | || ||||||||||| || ||| | || ||||| | Sbjct 27135147 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCGGCCACCGA 27135205 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 | | | | ||| || || || | ||| |||| ||| | |||||||| | |||| Sbjct 27135206 CCCGGATAGCTGAGCAACTTTAACCTCCCTCTTGTCGTTACGCTTGAAGCACGTAAACAT 27135265 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| | ||| |||||| ||||| || Sbjct 27135266 CACCTTACGCTGACCAGGCTTTAGGCCATC 27135295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482828426480